K16610

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16610

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16610

Determination of introduced cDNA(s)

  • J023030G02 - Rice Full-length cDNAs - Original: J023030G02

    full reading [+] show sequence

    Nucleotide sequence: J023030G02 - full reading 
    GTTGCAGACC CAAGTGCCAA AGCTTTCCAT GTCCACCGAT CTCACCATCC 
    CACCTTCCAT GGAGGCACCC GGCGCCGACA TCCAGGCGCT CATCCAGCGC 
    CTCAGGCTCC ACCGCCCGCG CCCCTCCCCG TACGCCGCCG CGGCGGCCCC 
    CTCGCCCGAC GCGGCCGCGC CGCCGGCCGA GCTGCTGTTC CGCCCTCGGA 
    GGGCCGCCGT GCTGATCTGC CTCTTCCGCG GCGCCGCCGG CGAGCTCCGT 
    GTCCTCCTCA CCAAGCGCTC CTCCAAACTC TCCTCCCACT CCGGGAGGTT 
    TCTTTGCCAG GAGGAAAGGC TGAGGAGGGT GATGCTGATG ATGCAGCAAC 
    AGCATTAAGG GAGGCAAAGG AGGAGATTGG ACTTGATCCA GCTTCTGTTA 
    CTGTTGTTGC CTCTCTTGAG CACTTCTTGT CAAAGCATCT TCTGGTAGTT 
    GTCCCTGTTG TTGGCATACT CTCTGATATA CAAGCATTTA AACCTGTTCT 
    TAATGTTGAT GAGGTGGATA GCATTTTCGA TGTACCCTTG GAGATGTTTC 
    TCAAGGATGA GAAAAGGACA TCTGAGGGGC GTGAATGGAT GGGACAAGAA 
    TTCACAATTC ATTACTTCAA TTACGAGAAA GGGAGTGAGA AGTACGTAAT 
    ATGGGGTCTG ACTGCTGGCA TCCTGATACA TGCTGCTTCA GTTGTATTCC 
    AGCGGCCACC AGACTTTCCT GCACGAACAG TGCAATTCAA CTTGCCGAAG 
    TACTCAAAGG AGTGTTCTTC AATGCCATGA GCAGCACCTG TGAAACACTA 
    ATGTTTACAA TACAATTTCA GTTGTAGACC ATTGGGGTGT ACAGCAGAGC 
    AGATTTCATC TCAAAAGATT GGTACTGAAT CAAAAGGTTG TTTTATAGTT 
    TATATTCTTT GCACATTTTT TGTACATAAT ACTATGAGAA CATTAACATT 
    TATGAAAATG TTAATGCTAT TCGAGTACAC CCCAAATCCC TGATTAGATG 
    GGAGTAATCC ATTATAAATA TGGGTACCCA TTAGTCCGCT AGTTTTACTA 
    AAAACACACT TTTTCTTTAT TTCTTTATTT GTAGGTGAAA TAGAGTTGGG 
    CAATGGGCAC CTATGGATTA AACTACTGTC ATCCCTACCC CCAGTTGTCC 
    CAATAAGTAT TGATGTAAAC AAAGACTTGT ACTAAAACAG TTTGTAATAT 
    GTCAAAATCA GGTTGAGTCC

    Gene models with high sequence identity

    1. AT1G28960.5 [+] show detail - nudix hydrolase homolog 15
      E-value: 3e-56; Score: 60.50

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MUTT-NUDIX-RELATED 1.7e-09
    HMMPanther MUTT-NUDIX-RELATED 2.4e-29
    superfamily NUDIX hydrolase domain-like 2.3e-19
    HMMPfam NUDIX hydrolase domain 4e-09
    Gene3D NUDIX hydrolase domain 1.2e-29

    See the detailed result >

    AT1G28960.5

    Model type
    Protein coding
    Short Description
    nudix hydrolase homolog 15
    Computational Description
    nudix hydrolase homolog 15 (NUDX15); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), NUDIX hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 22 (TAIR:AT2G33980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR