K16630

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16630

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16630

Determination of introduced cDNA(s)

  • J013002F13 - Rice Full-length cDNAs - Original: J013002F13

    full reading [+] show sequence

    Nucleotide sequence: J013002F13 - full reading 
    TGGCTGTATT TATCGTCTTT GTCCTCATCT TTCTTTCTTG CTTTCCTCTA 
    CCTTGACTTT GGCTTCCCCA CTCTCTCTTC TTCTTGGGAG GCTGGGAGCT 
    ACCAGCACAA CACACCAAGG AAGCTGAGCA GGTGCGTTGA TTTCTTGATA 
    TCATGGCCAA GAGGCACCTC TTGTTGGTGA CAACTTGTTT GTGGGCTCTG 
    TCATGTGCCT TGCTGCTTCA TGCTTCCTCT GATGGGTTCC TGAGAGTCAA 
    CCTCAACAAG AAGAGATTGG ACAAGGAAGA TCTCACTGCC GCCAAGTTGG 
    CGCAGCAGGG CAACCGTCTT CTGAAGACCG GCAGTTCAGA CAGTGATCCT 
    GTCCCTCTGG TGGACTACCT CAACACCCAG TACTATGGGG TGATTGGCCT 
    CGGCTCACCG CCGCAGAACT TCACGGTGAT ATTTGACACT GGAAGCTCCA 
    ACCTGTGGGT TCCTTCAGCA AAATGCTATT TTTCGATAGC ATGCTACCTC 
    CACAGCAGAT ACAACTCGAA AAAGTCGAGC TCTTACAAAG CAGATGGAGA 
    AACTTGCAAA ATTACATACG GTTCTGGGGC AATTTCTGGA TTCTTCAGTA 
    AGGATAATGT GTTGGTTGGA GACCTTGTAG TGAAAAACCA GAAGTTCATT 
    GAGGCAACAC GCGAAACAAG CGTTACCTTT ATCATCGGAA AGTTTGATGG 
    AATTCTTGGT CTTGGCTACC CTGAAATCTC TGTTGGGAAA GCTCCTCCGA 
    TTTGGCAGAG CATGCAGGAG CAGGAACTGC TTGCAGATGA TGTCTTCTCG 
    TTTTGGCTGA ACCGAGACCC GGATGCATCC TCTGGTGGTG AGCTCGTCTT 
    TGGTGGCATG GATCCGAAGC ATTATAAGGG GGATCACACC TACGTCCCTG 
    TTTCCCGCAA AGGCTACTGG CAGTTTAACA TGGGGGATCT CCTTATTGAT 
    GGCCACTCAA CTGGCTTCTG TGCAAAAGGC TGTGCTGCTA TTGTCGACTC 
    CGGAACTTCC TTGCTTGCTG GTCCAACAGC TATAGTTGCT CAGGTGAACC 
    ATGCTATTGG GGCTGAAGGA ATCATCAGCA CGGAATGCAA AGAAGTGGTT 
    AGCGAGTATG GAGAGATGAT CCTCAACTTG CTCATAGCAC AGACAGATCC 
    GCAGAAAGTA TGCAGCCAGG TTGGTCTGTG TATGTTTGAC GGTAAACGCT 
    CAGTAAGCAA TGGGATTGAA TCTGTTGTCG ACAAAGAAAA CTTGGGTTCT 
    GATGCTATGT GTTCAGTTTG TGAGATGGCT GTTGTGTGGA TAGAGAACCA 
    GCTACGCGAA AATAAAACGA AGGAGCTGAT ATTGAATTAT GCTAATCAGT 
    TATGTGAGCG TCTACCAAGC CCCAATGGAG AATCAACTGT CAGCTGCCAT 
    CAAATCTCGA AGATGCCTAA TCTTGCATTC ACCATTGCAA ACAAGACATT 
    TATTCTTACA CCAGAGCAGT ACATCGTGAA ACTGGAGCAA GGAGGGCAAA 
    CCGTCTGCAT CAGCGGGTTC ATGGCGTTCG ACATACCTCC ACCACGCGGT 
    CCTCTTTGGA TTCTTGGAGA TGTCTTCATG GGTGCTTATC ATACGGTTTT 
    CGACTTCGGC AAAGACAGGA TCGGGTTCGC TAAATCTGCA TGAAGAGTGT 
    ATGTAGATCA CTCTTCAGAT CACGGAGATT AGCCTGTATA TTTCATAAGC 
    TGAAACCAAA CATGTATGGT TTTATGATAT ATAGTAGCTA GTACACGGAC 
    AAACCTCTTT GGTTGCTTCT TTCTGAAGAA AAAAGAAGAA CAGACATGGA 
    TGTATGATCT ACCTGATGTG TATAAATTGA ATGATGCAGT CTGAGAAATA 
    ATCCTCTGAT CATATTGTGG ATTCTGAAAT ATATCCGAGT TTCTTTTTTC

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 1e-176; Score: 616.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase A1 4.3e-120
    HMMPfam Saposin-like type B, 2 4.9e-14
    HMMPfam Saposin-like type B, 1 9.4e-14
    Gene3D Peptidase aspartic, catalytic 8.5e-82
    Gene3D Peptidase aspartic, catalytic 3.6e-21
    ProfileScan Saposin B 13.48
    ProfileScan Saposin B 12.669
    HMMPanther ASPARTIC PROTEINASE-RELATED 1.1e-289
    HMMPanther Peptidase A1 1.1e-289
    PatternScan Peptidase aspartic, active site 0
    PatternScan Peptidase aspartic, active site 0
    HMMSmart Saposin B 0.014
    HMMSmart Saposin B 2
    superfamily Peptidase aspartic 2.4e-121
    superfamily Saposin-like 1.1e-25
    FPrintScan Peptidase A1 8.1e-29
    FPrintScan Peptidase A1 8.1e-29
    FPrintScan Peptidase A1 8.1e-29
    FPrintScan Peptidase A1 8.1e-29

    See the detailed result >

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR