K16637

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16637

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16637

Determination of introduced cDNA(s)

  • J013102G17 - Rice Full-length cDNAs - Original: J013102G17

    full reading [+] show sequence

    Nucleotide sequence: J013102G17 - full reading 
    GGCGTGTGTA GCTACTGCTA TAAGGAGCGC GCCGTGCACC ACCTCTCACA 
    ATGTCGACCG CCGCCGCCGC CGCCGCTGCC CAGAGCTGGT GCTTCGCCAC 
    TGTCACCCCG CGCTCCCGCG CCACAGTCGT CGCCAGCCTC GCCTCCCCAT 
    CACCGTCCTC CTCCTCCTCC TCCTCCAACA GCAGCAACCT CCCGGCCCCC 
    TTCCGCCCCC GCCTCATCCG CAACACCCCC GTCTTCGCCG CCCCCGTCGC 
    CCCCGCCGCG ATGGACGCCG CCGTCGACCG CCTCAAGGAT GGGTTCGCCA 
    AGTTCAAGAC CGAGTTCTAT GACAAGAAGC CGGAGCTCTT CGAGCCGCTC 
    AAGGCCGGCC AGGCACCCAA GTACATGGTG TTCTCGTGCG CCGACTCTCG 
    CGTGTGCCCG TCGGTGACCA TGGGCCTGGA GCCCGGCGAG GCCTTCACCG 
    TCCGCAACAT CGCCAACATG GTCCCAGCTT ACTGCAAGAT CAAGCACGCT 
    GGCGTCGGGT CGGCCATCGA GTACGCCGTC TGCGCCCTCA AGGTCGAACT 
    CATCGTGGTG ATTGGCCACA GCCGCTGCGG TGGAATCAAG GCCCTCCTCT 
    CACTCAAGGA TGGAGCACCA GACTCCTTCC ACTTCGTCGA GGACTGGGTC 
    AGGACCGGTT TCCCCGCCAA GAAGAAGGTT CAGACCGAGC ACGCCTCGCT 
    GCCTTTCGAT GACCAATGCG CCATCTTGGA GAAGGAGGCC GTGAACCAAT 
    CCCTGGAGAA CCTCAAGACC TACCCGTTCG TCAAGGAGGG GATCGCCAAC 
    GGCACCCTCA AGCTCGTCGG CGGCCACTAC GACTTCGTCT CCGGCAACTT 
    GGACTTATGG GAGCCCTAAA TCCGACCGTC CGTCCGTTCA GTTCGTCAGT 
    TTACGCCAAC GCTTTTGCAT AAGTACTACC TGAGGACATC GTCCCCGATC 
    ATCGATGTGA ACGCGTGGAG TACTACTACG TACGTACCGG ATGGTTCGAT 
    ATATGTGAAT GCTGTATTAA GTAATAACAA GAAATATATC TCCTCTACTT 
    TTTCCTGACG CGGAGTTGTA CTGCCTATGA TGCATAATTT GATCGCAGTG 
    TGATCAAAAG ACATCAGCTA TAATGTCTTA ATAATATTAT TATGAAGAGT 
    TTACCTTTTT ACT

    Gene models with high sequence identity

    1. AT5G14740.2 [+] show detail - carbonic anhydrase 2
      E-value: 9e-64; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR11002:SF1 3.39999972437687e-99
    PatternScan Carbonic anhydrase, prokaryotic-like, conserved site 0
    HMMPfam Carbonic anhydrase 8.70000000000003e-40
    superfamily Carbonic anhydrase 2.1e-62
    HMMPanther Carbonic anhydrase 3.39999972437687e-99
    PatternScan Carbonic anhydrase, prokaryotic-like, conserved site 0
    Gene3D Carbonic anhydrase 4.69998262513189e-63

    See the detailed result >

    AT5G14740.2

    Model type
    Protein coding
    Short Description
    carbonic anhydrase 2
    Curator Summary
    Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.
    Computational Description
    carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR