K16644

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16644

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16644

Determination of introduced cDNA(s)

  • J023038I10 - Rice Full-length cDNAs - Original: J023038I10

    full reading [+] show sequence

    Nucleotide sequence: J023038I10 - full reading 
    GGCCTTCTCC TTCTTCTCCG ACGGCGAACA CCGTCCATCG CGAGAACTCT 
    TACCTCGTCG GCGTCGGCGT CGGCGTCGGC GAGGAGGAGC AAACATTTAC 
    GGCTGGCTTG CAATCTTAAT CTTTTGCAGT GTTCGTCATT CAGGAGGCTC 
    CCGGCCGATC CGGTGGATCG GATCGGAGCG GGAGCACAAA CTGCAAATTG 
    CCACGGTCCT TGCACTTGAT TTCCGGAGCC AGGAGGATGA TTTGCTGCGG 
    CGGCGAGGAG GAGGAGACGT ACGCTCCCCG TGCAGCCAGT CGCAGTCGCA 
    GCAGGCGCCC GACACCTGCG ACGCAGTACG ATGCAGGCCC TCGTAAGCCA 
    AGAGGACCAA ATGCACCCAG GAGCGGCGGC CCGCCACCGA AGGTGCTCTC 
    CATCGACGTG CCAGCCATCT CCATGGGCGA GCTGAACAAC ATCACCGGAC 
    ACTTTGGACA GAGTGCCTTG ATAGGAGAAG GTTCGTACGG TCGAATCTAC 
    AGGGCGGTGC TGACCTCCGG GGAGCCGGTT GCCATAAAAA AGCTTGATCC 
    CAGCGTGTCA AGCGACTCTG AAGCAGACTT CTCTGCTCAG CTGTCAATGG 
    TTTCGAGGCT CAAGAACGAG TATTTCATCC GGCTGATGGG CTACTACCTG 
    GATGCAAACC GAAGAATCCT GGTCTACCAG TTTGCCACGC ACGGCTCCCT 
    GCATGACATC CTACACGGGA AGAAGGGCGT GAGGGACGCG GCGCCGGGGC 
    CGGCGCTGAA CTGGAGCCAG CGGGTGAAGG TGGCGTACGG CGCCGCGAGA 
    GGGCTCGAGT ACCTCCACGA GAAGGCCCAG CCGCCCATCG TCCACCGCGA 
    CGTGCGGTCG AGCAACGTTC TCCTCTTCGA CGGCTACGAG TCCAAGCTCG 
    CCGACTTCAA CCTCACCACC CAGCCTCCCG ACGGCGCCGC GCGGTTGCAC 
    TCCACCCGCG TCCTCGGAAC CTTCGGCTAC CACGCGCCCG AGTACGCGAT 
    GACGGGACAG CTTAATCAGA AGAGCGATGT GTACAGTTTC GGAGTCATCC 
    TACTGGAGTT ACTGACCGGC AGGAAGCCAG TGGACCATAC CATGCCGAAG 
    AGACAGCAGA GTCTTGTAAC CTGGGCGACG CCAAGGTTGA GCGAGGACAA 
    GGTGAGGCAG TGCGTGGATC CGAAACTCGG GGATGACTAT CCTCCAAAAG 
    CAGTTGCCAA GATGGCGGCG GTAGCGGCGT TGTGCGTGCA ATACGAGTCA 
    GATTTCCGGC CGAACATGAC CATCGTGGTG AAGGCGCTGC AGCCACTTCT 
    CAGCAAGCCA GCCGGAGCAG GAGGGCCCTA GCAGCACATG CATACTAACA 
    CCAGCCCATG CATCAAACCA ACTTAGCATC CAAAACACAT TATGTGCTCT 
    GTTCTTCTTG GATGCTGAGA CTTGTTAAAC AGCTGGTGAT TGTACCATGT 
    ACTACTCACA AATCAATCAA ACTGCTAAAA GGGTCCAAGG GCTCACAGAG 
    TTTCAGGTCA TTGGCTGTGA TTCTCCATTG TTCCTTCAGT CCTTACCTTT 
    GTTTAGGTTT CAGATCAGTA GATATTTTTG CAATTTCGCT GTCCCGTTCT 
    GTAGGTACGT AAGGGTCCAT TCCACTGCAT GACTGCAAGC TACGTCGTGT 
    TCTTATCTTA AGACATTTAT TGACATCACA CCGATGGGAG ACAAACTGAC 
    AACCGAAGGA CTGTAGAGAA AATAGGAGGC CTCCTTATCA AAGAGAGAAA 
    CATTAATAGA GACAATATCT CAGTGTAGCT GCAGTTTGTG ATGACTGTGG 
    CTTGATTGTT CGCATTACGC TGTCAGCTGT TATGGGTTAG TAGTTATAAC 
    TTTCTCACTA TGAACAGATG ATATTTTCAT TTC

    Gene models with high sequence identity

    1. AT2G41970.1 [+] show detail - Protein kinase superfamily protein
      E-value: 1e-137; Score: 487.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Tyrosine-protein kinase, active site 0
    superfamily Protein kinase-like domain 6e-69
    ProfileScan Protein kinase, catalytic domain 35.199
    Gene3D no description 0.00000000000013
    Gene3D no description 1.2e-47
    HMMSmart Serine/threonine-protein kinase domain 9.3e-19
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.8e-18
    HMMPanther SERINE/THREONINE SPECIFIC RECEPTOR-LIKE PROTE 1.4e-177
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.4e-177
    HMMPfam Serine-threonine/tyrosine-protein kinase 9.4e-42

    See the detailed result >

    AT2G41970.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G59350.2); Has 104388 Blast hits to 103490 proteins in 4408 species: Archae - 91; Bacteria - 12474; Metazoa - 38816; Fungi - 7787; Plants - 30601; Viruses - 278; Other Eukaryotes - 14341 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR