K16707

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16707

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16707

Determination of introduced cDNA(s)

  • J033099F17 - Rice Full-length cDNAs - Original: J033099F17

    full reading [+] show sequence

    Nucleotide sequence: J033099F17 - full reading 
    GAACTAGAAC CCCCACGCAC TCACGCGCAC TGCACGCCGC AACACAACGC 
    GCTCGCCTCG CCTCGCCCCG ATCGGTGGTG GTGCTCGCCG TCGCCGGGCG 
    GCGCTAGGGT GGCCGGAGAG GCTCCGGAGA GTAGGAGGAG GAGGAGGAGC 
    CGGAGATGAG GGGGTCGAGG AGGCCGGTGG CCGTGGTGCT GAGCTGGGTG 
    CGGAGGCAGC CGCCCAAGGT CAAGGCGTTC CTCGCCGTGG TCGCCGGGAT 
    GGCCGCGCTC GTCTTCATCC GCTTCATCGT CCACGACCAC GACAACCTCT 
    TCGTCGCCGC CGAGGCCGCC CACGCGCTCG GCCTCGGAGT CCTCATCTAC 
    AAGCTCACCA AGGAGAAGAC CTGCGCCGGA CTCTCACTCA AGTCTCAGGA 
    TTTAACAGCA CTATTTCTGG CTGTTAGGCT GTACTGCAGT TTTGTTATGG 
    AGTATGACAT CCATACCATA CTTGATACAG CTACACTAGC AGCTACTCTC 
    TTTGTCATCT ACATGATTCG GTTCAAACTG AGGTCAACTT ATATGCTGGA 
    CAAGGACAAT TTTGCATTGT ACTACGTGGT GTTACCTTGT GCTGGCCTAG 
    CTCTCCTGGT TCATCCTTCA ACATCGCATA ACATCATCAA CAGGATCTCC 
    TGGGCTTTCT GTGTTTATTT GGAAGCTGTT TCAGTGCTGC CACAGTTGCG 
    TTTGATGCAA AACACAAAGA TTGTGGAACC ATTTACAGCT CATTATGTGT 
    TTGCATTGGG TGTTGCAAGG TTTCTTAGCT GCGCACACTG GGTCCTTCAG 
    GTTTTGGATA CCCGTGGTCG CTTGTTGACT GCTCTGGGCT ATGGTCTCTG 
    GCCTTCGATG GTGCTTCTCT CTGAAATCGT TCAGACGTTC ATCCTTGCTG 
    ATTTCTGCTA CTACTATGTG AAGAGTGTTT TTGGTGGGCA ACTTGTCCTT 
    CGACTTCCGT CTGGAGTGGT GTAAAAATGC AGCAGGATGC AACATGTTAT 
    GGGCTTTGTG CACGTTTAGT ACATCGTCGG ATACCAGAGC CTTGTTTGCT 
    TGATAATTTT TTTCAGTTAC AAATTGCTCA TGTGAAAAAT GTACCTACCA 
    GAGACCGTGA TGAAATCTAG AGACTAGTTT TTAACT

    Gene models with high sequence identity

    1. AT4G38790.1 [+] show detail - ER lumen protein retaining receptor family protein
      E-value: 3e-127; Score: 451.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan ER lumen protein retaining receptor 1.4e-15
    FPrintScan ER lumen protein retaining receptor 1.4e-15
    FPrintScan ER lumen protein retaining receptor 1.4e-15
    FPrintScan ER lumen protein retaining receptor 1.4e-15
    FPrintScan ER lumen protein retaining receptor 1.4e-15
    HMMPanther ER LUMEN PROTEIN RETAINING RECEPTOR 1.7e-185
    HMMPanther ER lumen protein retaining receptor 1.7e-185
    HMMPfam ER lumen protein retaining receptor 4e-39

    See the detailed result >

    AT4G38790.1

    Model type
    Protein coding
    Short Description
    ER lumen protein retaining receptor family protein
    Computational Description
    ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT2G21190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR