K16709

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16709

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16709

Determination of introduced cDNA(s)

J013107I12 - Rice Full-length cDNAs - Original: J013107I12

full reading [+] show sequence

GACTTCCTCC TCCTCCCACT GTTCTTCGCC CTCAGCTCTC GCCGCGCCGC 
GCCCGCGCGT GAGCGGACTA CAGTGTCAGC TTGCTAGCTC ACAGGCGTCG 
CTGGCCGCCG CCCGCCGCGC GCGCGATCGG TGGCGAGGCG GAGATGCTGC 
GGGCGGCGAA GTACCTGCTG GGTTCCCCTG GCGCCAACGG CTTCGGCTCC 
AAGTCCACCG CCGAGGACGT CTGCCCCGAC CTCGGCTGCA TCACCGCCAT 
CATCACAGGC GCGACGTCCG GGATAGGGGC GGAGACGGCG CGGGTGCTGG 
CGAAGCGCGG GGCGCGGGTG GTGATCCCGG CGAGGAACGT GAAGGCAGCG 
GAGGACATGC GGGCGCGCAT CCGCGGCGAG TGCCCGGGCG CCGACGTCCT 
CGTTCTGCCG CTCGACCTCA GCTCGCTCGC CTCCGTCCGC GCCTTCGCCG 
ACCGCTTCCT CTCCCTCGGC CTCCCGCTCC ACCTCCTCAT CAACAATGCC 
GGCAAGTTCT CGCATGGGCA GCTCGCTCTG TCGGAGGACG GCGTCGAGAT 
GACGTTCGCC ACCAACTACC TAGGCCATTT CCTGCTGACG AAGCTGCTGC 
TGGGGAGGAT GGCGGAGACG GCGGCGGCGA CCGGCGTGCA GGGCCGCATC 
GTCAACGTGT CGTCCAGCGT GCACAGCTGG TTCGCCGGCG ACTGGGCGGA 
GTACCTCGAC CTCGTCACCC GCCGGAAGAT AGCTTACGAC GCGACGCAAG 
CGTACGCGGT GTCCAAGCTC GCCAACGTGC TGCACACCAA GGAACTCGCC 
GTGCGCCTCA AGGAGATGGG CGCCAATGTG ACGGTGAACT GCGTGCACCC 
GGGCATCGTC AGGACGCGGC TCAACCGTGA CCGCGACGGC CTCGTCACAG 
ATCTGGTGTT CCTGCTGCTG TCCAAGCTGC TGAAAACCAT CCCTCAGGCT 
GCGGCGACCA CGTGCTACGT GGCGGCCCAC CCGAGGCTGG CCGGCGTGTC 
CGGCCGCTAC TTCGCCGACT GCAACGAGGC CCTGCCGTCG CCGGCCGCCA 
CCAACCGCCA CGAGGCCGAG CGGCTGTGGC AAATCTCCGA GTCCATGCTG 
CTCTGCACGA ACAGACACAG CAAAGATGCC TCCGCTCCCT GACACAGCTG 
ACTGGCTAAT CTTTACCGTA TTTTACTACT ACCCATCCTA AAATATAATA 
ACTTTTATCT ATAAATTTGA ACAATTAAAA ATACTTATAT TTTAGGATGG 
AGGAAGTAGT GCATCACTGT CTTTTCTCTT GTTCCACATT ACATATATAC 
AGCTTCATGC AATATGTAAC CTGCAAATAT TATAGTAGTA TGAGCACCAG 
TGTATAAATA TATAGTAGTA TATCTGTAGC ATTATAGCAG TAGCAGCCAA 
TTATATTAGT GATTGTATTT CCGAGATATA TAATACTAGT ATACAGTACG 
CTGTAATTTG TCCTCGAGTA CC

Gene models with high sequence identity

AT4G24050.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 5e-87; Score: 318.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	RETINOL DEHYDROGENASE	2.6e-113
HMMPanther	Short-chain dehydrogenase/reductase SDR	2.6e-113
FPrintScan	Glucose/ribitol dehydrogenase	7.3e-19
FPrintScan	Glucose/ribitol dehydrogenase	7.3e-19
FPrintScan	Glucose/ribitol dehydrogenase	7.3e-19
FPrintScan	Glucose/ribitol dehydrogenase	7.3e-19
FPrintScan	Glucose/ribitol dehydrogenase	7.3e-19
FPrintScan	Short-chain dehydrogenase/reductase SDR	4.7e-05
FPrintScan	Short-chain dehydrogenase/reductase SDR	4.7e-05
FPrintScan	Short-chain dehydrogenase/reductase SDR	4.7e-05
Gene3D	NAD(P)-binding domain	4.9e-54
HMMPfam	Short-chain dehydrogenase/reductase SDR	1e-22
superfamily	NAD(P)-binding domain	1.7e-53

See the detailed result >

AT4G24050.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G64590.1); Has 59308 Blast hits to 59247 proteins in 3068 species: Archae - 448; Bacteria - 39701; Metazoa - 3820; Fungi - 3579; Plants - 1905; Viruses - 0; Other Eukaryotes - 9855 (source: NCBI BLink).
Link: InterPro Scan - TAIR