K16716

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16716

Determination of introduced cDNA(s)

J023101D03 - Rice Full-length cDNAs - Original: J023101D03

full reading [+] show sequence

GCCACTCGAA GAGCTCGGCG GTGGAACAGC TCGCTCGATC ATGGCCGCCG 
CCGCCGCCGC CTCAAGGGCG CTCTGGGCTT GCCGCACCGC CTCCTACCTT 
CGGATCTCCT CCTTCCCCAG GGCTTTCTCC ACCGTCCTTA AAGATCTAAA 
ATATGCTGAT ACTCATGAGT GGGTGAAGGT TGAGGGTGAT TCAGCAACCA 
TAGGGGTCAC AGACCATGCT CAGGACCATT TGGGTGATGT TGTGTATGTT 
GAGCTTCCAG AAGTTGGTTC CACAGTATCA CAAGGAACGA ACTTTGGTGC 
GGTTGAAAGT GTGAAAGCAA CCAGTGATAT CAATGCACCA GTATCTGGAG 
AGATTATTCA AGTAAATGAT GAACTAAGTG AAAAACCAGG ATTTATAAAT 
GGAAGTCCAT ATGAGAAGGG ATGGATCATC AAGGTTAAGA TAAGTGATCC 
AAGTGAGTTA AACTCGCTGA TGGATGATGA GAAGTACAAG AAGTTTTGTG 
AGGAAGAAGA TGGCAAACAC TGATCAATCC CCTAACTGCT GGATTTCAAG 
AAACTATGCA GCAACTCACC ATCATGACAA TGAGCCATCT CGCCTCTCCT 
ACCACATTAT ATTATTCTGG ATAGAGGAGT CCCAAGGAAT GTAATAAGCT 
GAAACATTTT TCTTGCAAAT CAGACATGAA AATTTTGTAG TGTCCTGATC 
ATTCCGTTTG TGCTCCATTT GAAATTCAGC TCTTGATTTG CTTATCATCT 
GAATACAGGT GGAGGATTGG GTTTGTTTAA ACTTTGATTA AGTGACAGTG 
ACTTGATTGT ATTGAGATTG C

Gene models with high sequence identity

AT2G35120.1 [+] show detail - Single hybrid motif superfamily protein
E-value: 1e-57; Score: 219.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Glycine cleavage H-protein	1.1e-49
HMMPanther	Glycine cleavage H-protein	2.4e-66
superfamily	Single hybrid motif	3.2e-48
HAMAP	Glycine cleavage H-protein	29.41
Gene3D	no description	2.9e-48
HMMTigr	Glycine cleavage H-protein, subgroup	6.1e-68
PatternScan	2-oxo acid dehydrogenase, lipoyl-binding site	0

See the detailed result >

AT2G35120.1

Model type: Protein coding
Short Description: Single hybrid motif superfamily protein
Computational Description: Single hybrid motif superfamily protein; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, ATP binding; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, glycine cleavage complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G32470.1); Has 7147 Blast hits to 7147 proteins in 2201 species: Archae - 168; Bacteria - 4552; Metazoa - 187; Fungi - 130; Plants - 205; Viruses - 0; Other Eukaryotes - 1905 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J013170E20 - Rice Full-length cDNAs - Original: J013170E20

full reading [+] show sequence

GGTACTACGC CAATGGCTCT CCGCTGCCTA GCTGCTGCCG CAGTACAGCT 
TGATCGTTGC CCGTAACCTC CCGTGGCTCC GATCCCGTCT CCGGCGCGGC 
GCGCGGCTCG GCGTTGAGAC AGTTTGCCGC CTCATGTCCC GGGAGCTGGA 
GCTGCTGCTG TTTTTGCTGG CCCTACGGGC GAGCGGCGAG GTCGTCGCGG 
GTTCGGCGGA GGCAGCGGCA GCGGCAGCGG CGTGGCCCGC GCTGCAGGTG 
GGGTTCTACC ATGCCAAGTG CCCTGTCGCG GAGGACGTCG TGCTGGGCGA 
GATGAGGATG ATCCTCGAGG AGGATCCCAC GCTCGCGCCG TCTCTGCTCC 
GGATGCACTA CCACGACTGC TTCGTCCAGG GGTGTGACGG ATCGATCATG 
CTGAGGTCGA GGAGCGGGAA GGGGGAGAGG GACGCGACGC CCAACCGGAG 
CATGCGGGGC TACGACGCCA TCAATCGGAT CAAGGCGAGG CTGGAGACCG 
TCTGCCCGCT CACCGTCTCC TGCGCCGACA TCATCGCCAT GGCGGCGAGA 
GACGCCGTCT ACCTGAGCAA GGGGCCGTGG TACGACGTGG AGACCGGGAG 
GAGGGACGGC GACGTGAGCG TGGCCGAGTA CGCCGAGAAC GACCTGGCGC 
CGCCGGACTC CAACATCGTC GACGTCAAGA CCTTCTTCAG CGTCAAGTCT 
CTCAACGCCA AGGACATCGC CGTGCTCTTC GGATGCCACA GCATCGGGAC 
GTCGCACTGC GGGGCGTTCC AGAAGCGGCT GTACAACTTC ACCGGAAGGA 
TGGACCAGGA CCCGTCGCTG GACGCCGGCT ACGCGGCGAA GCTCAAGAAG 
CTCTGCCCGC CGGGGCACGG CCACGACCAC GACCACGACG GCCATGGCGG 
CGCCGGCGGC GCGGCCAAGG TGCCCATGGA CCCCGGCAGC GGCTTCACAT 
TCGACCTGAG CTACTACCGG CACGTGCTCG CCACGGGCGG CCTGTTCCAG 
TCGGACGGCA GCCTCCGCGA CGACCCCGTC ACGAGGGGCT ACGTCGAGAA 
GCTCGCCAAC GCGTCGTCGT CGGAGGAGTA CTTCGCCGAC TTCGCGGCGG 
CGATGGTCAA GATGGGCCGC ACCGACGTGC TCACCGGCGA TCTCGGGGCG 
GTCAGGCCGA CGTGTGACAG CCTCGTCGAC TAGTTTATTC GGCGTCCCGC 
CACATTTGTG ATCTGTAGAA TTTTATATGG TTTTCTCTGT AACATATATG 
TAATTTCGAT TTAGATTAGG GAAAGGTTGA GACTTGAGAG AAGTTGCAGT 
TTCTACGCTT TTGAGGAGAC TGATTGGAAC AGCGTATGAA TCTAGAGTTA 
AACACTTGTC AGTTGTCAAA CTACTACAAA CTAATGAATC TGTACAGATG 
GGCTTGATG

Gene models with high sequence identity

AT1G05260.1 [+] show detail - Peroxidase superfamily protein
E-value: 1e-75; Score: 280.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	4.6e-52
superfamily	Haem peroxidase	7.1e-94
HMMPfam	Haem peroxidase, plant/fungal/bacterial	1.8e-66
ProfileScan	Haem peroxidase, plant/fungal/bacterial	67.672
FPrintScan	Plant peroxidase	3.6e-45
FPrintScan	Plant peroxidase	3.6e-45
FPrintScan	Plant peroxidase	3.6e-45
FPrintScan	Plant peroxidase	3.6e-45
FPrintScan	Plant peroxidase	3.6e-45
FPrintScan	Plant peroxidase	3.6e-45
FPrintScan	Plant peroxidase	3.6e-45
FPrintScan	Plant peroxidase	3.6e-45
FPrintScan	Plant peroxidase	3.6e-45
FPrintScan	Haem peroxidase, plant/fungal/bacterial	2.3e-24
FPrintScan	Haem peroxidase, plant/fungal/bacterial	2.3e-24
FPrintScan	Haem peroxidase, plant/fungal/bacterial	2.3e-24
FPrintScan	Haem peroxidase, plant/fungal/bacterial	2.3e-24
FPrintScan	Haem peroxidase, plant/fungal/bacterial	2.3e-24

See the detailed result >

AT1G05260.1

Model type: Protein coding
Short Description: Peroxidase superfamily protein
Curator Summary: Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
Computational Description: RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link: InterPro Scan - TAIR