K16726

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16726

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16726

Determination of introduced cDNA(s)

  • J023052D08 - Rice Full-length cDNAs - Original: J023052D08

    full reading [+] show sequence

    Nucleotide sequence: J023052D08 - full reading 
    GGCGAATCCA GTGGCACACA GAGCTAGCTA GCGATGGCGG CCGGAGCCGG 
    AGGAGACGGC GGCGGCGAGC TGAAGCTTCT GGGGACGTGG GCGAGCCCGT 
    TCGTGCAGCG GGTGCGCCTC GCGCTGAACC TCAAGGGCCT CGCGTACGAG 
    TTCATCGAGG AGGAGATCGG CGGCGGCAAG AGCGAGCTCC TCCTCGCCTC 
    CAACCCCGTC CACAAGAAGG TCCCCGTCCT CCTCCACCGC AGCAACCCCA 
    TCTGCGAGTC CCAGGTCATC GTCCAGTACC TCGACGACGC CTTCCCCGGC 
    GGCGCCGCCG GCGGCGACCT CCTCCCCTCC GACCCCCACG CCCGCGCCGT 
    CGCCCGATTC TGGGCGGCGT ACATCGACGC CGAGTTCTTC GCGCCGTGGA 
    ACAGGTCGTT CTACACGGCG TCGGAGGAGG AGAAGACGGC GGAGATGGGG 
    AGGGCGGCGG CGGCGCTGGC GACGATCGAG CGCGCGTTCG CGGAGCTGTC 
    GAGGGGGAAG GGGTTCTTCT CCGGCGAGGA CAGGCCGGGG TTCGTCGACG 
    TGGTGCTCGG CGGGTTCGTG GGCTCGATGC GCGCGTACGG CACGGCGGTC 
    GGCGTGGAGG TGCTCGACGC CGGGCGCACC CCGCTGCTGG TGGCGTGGGC 
    GGAGCGCGTC GCGGCGCTCG ACGCCGCCAG GGGCGTCATC CCCGACGTCG 
    AACGCGTCGT CGAGCTCTCG CGCTACGCGA GGAAGAAGTA GACACGGTAA 
    CGATTTGTGT TGTCCTGTGG TGTTTGTATC GTCAAAATAA ATGTGGCACA 
    AAGGTTGTCA TCATTAGTGA GCATTCTTGC CGGTTTCTTC TCCAGTTTAA 
    GTGTCTGTGT TGCTTTTGTT TGGACTGCGG GGATGTTAGA ATATATGGTA 
    GTTAGAGTTA TATTAGAATG GACTGATTTG TGTGGACTTC TTTCATATCT 
    GTAATTCTTT CTTATCTTCT CCCCATGTAC TCCTATATAT CGGCCCCTGA 
    GGCTCAATAT AATGGGTCCA ATATTCATAG T

    Gene models with high sequence identity

    1. AT1G10370.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 6e-35; Score: 145.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutathione S-transferase, N-terminal 0.00000000045
    Coil coiled-coil 0
    ProfileScan Glutathione S-transferase, N-terminal 20.899
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 15.425
    Gene3D Thioredoxin fold 1.5e-25
    Gene3D Glutathione S-transferase, C-terminal-like 1.2e-39
    superfamily Glutathione S-transferase, C-terminal-like 1.6e-38
    superfamily Thioredoxin-like fold 1.6e-20
    HMMPanther GLUTATHIONE S-TRANSFERASE 1.2e-94
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 1.2e-94

    See the detailed result >

    AT1G10370.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Computational Description
    EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, response to karrikin, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1); Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0; Bacteria - 2896; Metazoa - 397; Fungi - 130; Plants - 2065; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR