K16930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16930

Determination of introduced cDNA(s)

J013127L22 - Rice Full-length cDNAs - Original: J013127L22

full reading [+] show sequence

GTCTCCCCCC ATTGCCGCCG CCGCCTGCGA CGGCCGCGAG CTCATCCCGA 
GACGACGTCT CTAGCTAGCA TCGAGCGTTC TTTCTCTCCT CGGGCTCTCG 
TTGTTGAGAT AAGGCAAATC AAGAGAGCAA AATTTTGGTG GTACATGTGG 
TGATTCTATG TCGACAAGGC GTCATCTTGC AGTATTTACC ACTGCAAGCC 
TCCCATGGAT GACAGGAACG GCCATCAACC CGTTGTTCCG GGCGGCCTAT 
CTTGCAAAGG ATGGGGATAG GGAGGTCACC TTGGTAATCC CCTGGCTTTC 
TCTGAGGGAC CAAGAATTGG TTTACCCGAA TAAGATTGTG TTCGGTTCGC 
CTTTGGAGCA TGAGGCCTAT GTTCGTCGCT GGATTGAGGA GAGGATCAGT 
TTCAGACCTT CCTTCAGCAT CAAATTCTAC CCTGCGAAGT TCTCTAAAGA 
ACTGAGAAGT ATTCTACCTG TTGGAGATAT CACAGAATGT ATTCCAGATG 
AAGTGGCTGA TGTTGCTGTT CTGGAAGAAC CTGAACATCT CAATTGGTAC 
CACCATGGGC GCAAATGGAA AAATAAGTTC AGGCGAGTGA TAGGTGTGGT 
TCACACAAAT TATATAGCAT ATGTGAAAAG AGAAAAGAAT GGACAAGCGA 
TTGCCTGTTT CATGAAGTAC ATGAACACCT GGGTTACCCG GATTTATTGC 
CACAAGATTA TCAGATTGTC AGGTGCCACC CAAGATCTTC CCAGATCTGT 
TGTGTGCAAT GTCCATGGCG TGAATCCAAA ATTTCTTGAG GTAGGTAAAC 
TAAAGTTGAA GCAGCTGCGG AATGGGGAAA TAGCCTTCAC AAAAGGGGCA 
TACTATATTG GGAAGATGGT GTGGAGTAAA GGATACAGGG AACTTCTTGA 
CCTGCTGTCC AAATATCAGA GCAAGTTGGT GGGTTTGGAA GTAGATTTAT 
ATGGTAGCGG AGAAGATTCC GACGAAGTTC GAAAATCTGC AGAACTTCTG 
AGTTTGGCCG TGAAGGTTCA CCCAGGACGT GATCATGCAG ATCCCCTGTT 
CCATGACTAT AAAGTATTCA TCAACCCTAG CACAACAGAT GTGGTCTGTA 
CAACAACTGC CGAGGCCCTT GCAATGGGAA AGATTGTCAT ATGTGCCAAT 
CACCCTTCAA ACGAGTTCTT CAAGCAGTTC CCTAATTGCC GCACCTATGA 
CAGTGGCGAG GAATTTGTAC TAACGCTGGA TGCTCTAGCA GAGCAGCCTG 
CTCCACTGAC TGACATGCAG AGTCATGACC TATCTTGGGA GGCCGCGACC 
GAGAGATTCA TGGAAGCCGC GGAGCTGAAC CTTCCTATCT CAGCAGAGCC 
AAGAATCCAT CAAACATCCA AGGTCTCTCT CCCTGCTTTT ATGAGGACTC 
GTAAACTGAA ACAGAGCTTG GAGGATGCAT CAGTTTACCT GCATCAAGCA 
CTCTCAGGAC TTGAAGTCAC CCGTCGCGCC TTCGGTGCTG TTCCGAAGAC 
GCTGCAACCT GATGAGCAGC TGTGCAACGA TCTAGGTTTG GCTCCCGCCA 
AGAAAAAGAG GTTGAAATTG AAGCTGATGA CCTGATGATG TAACTTCTCT 
TGAGCCCCTG ATTGCATCGT GTCATTTCCT TTTCTGCACA TTATATCCGA 
GGAGTATGTA TGAATCCTAA TGGAGGATCA GTGCATTTTC CATTAGTATG 
TTTACTTAGT TCAGGATGTA AATTACACTA CAAATGTAAT TGGACTATTG 
GAGACTTTGG AGTACTAGTA CTACTAACCT AGTGGCTTTA TTGAAAATTT 
AAAACTGTGA TGTGATTCTG CC

Gene models with high sequence identity

AT4G00550.1 [+] show detail - digalactosyl diacylglycerol deficient 2
E-value: 0; Score: 634.00

InterPro Scan Digest

Program	Description	E-value
superfamily	UDP-Glycosyltransferase/glycogen phosphorylas	0.000000000019
HMMPanther	GLYCOSYLTRANSFERASE	0.0000048
HMMPfam	Glycosyl transferase, group 1	0.000000045

See the detailed result >

AT4G00550.1

Model type: Protein coding
Short Description: digalactosyl diacylglycerol deficient 2
Curator Summary: encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.
Computational Description: digalactosyl diacylglycerol deficient 2 (DGD2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR