K16930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16930

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16930

Determination of introduced cDNA(s)

  • J013127L22 - Rice Full-length cDNAs - Original: J013127L22

    full reading [+] show sequence

    Nucleotide sequence: J013127L22 - full reading
    GTCTCCCCCC ATTGCCGCCG CCGCCTGCGA CGGCCGCGAG CTCATCCCGA 
    GACGACGTCT CTAGCTAGCA TCGAGCGTTC TTTCTCTCCT CGGGCTCTCG
    TTGTTGAGAT AAGGCAAATC AAGAGAGCAA AATTTTGGTG GTACATGTGG
    TGATTCTATG TCGACAAGGC GTCATCTTGC AGTATTTACC ACTGCAAGCC
    TCCCATGGAT GACAGGAACG GCCATCAACC CGTTGTTCCG GGCGGCCTAT
    CTTGCAAAGG ATGGGGATAG GGAGGTCACC TTGGTAATCC CCTGGCTTTC
    TCTGAGGGAC CAAGAATTGG TTTACCCGAA TAAGATTGTG TTCGGTTCGC
    CTTTGGAGCA TGAGGCCTAT GTTCGTCGCT GGATTGAGGA GAGGATCAGT
    TTCAGACCTT CCTTCAGCAT CAAATTCTAC CCTGCGAAGT TCTCTAAAGA
    ACTGAGAAGT ATTCTACCTG TTGGAGATAT CACAGAATGT ATTCCAGATG
    AAGTGGCTGA TGTTGCTGTT CTGGAAGAAC CTGAACATCT CAATTGGTAC
    CACCATGGGC GCAAATGGAA AAATAAGTTC AGGCGAGTGA TAGGTGTGGT
    TCACACAAAT TATATAGCAT ATGTGAAAAG AGAAAAGAAT GGACAAGCGA
    TTGCCTGTTT CATGAAGTAC ATGAACACCT GGGTTACCCG GATTTATTGC
    CACAAGATTA TCAGATTGTC AGGTGCCACC CAAGATCTTC CCAGATCTGT
    TGTGTGCAAT GTCCATGGCG TGAATCCAAA ATTTCTTGAG GTAGGTAAAC
    TAAAGTTGAA GCAGCTGCGG AATGGGGAAA TAGCCTTCAC AAAAGGGGCA
    TACTATATTG GGAAGATGGT GTGGAGTAAA GGATACAGGG AACTTCTTGA
    CCTGCTGTCC AAATATCAGA GCAAGTTGGT GGGTTTGGAA GTAGATTTAT
    ATGGTAGCGG AGAAGATTCC GACGAAGTTC GAAAATCTGC AGAACTTCTG
    AGTTTGGCCG TGAAGGTTCA CCCAGGACGT GATCATGCAG ATCCCCTGTT
    CCATGACTAT AAAGTATTCA TCAACCCTAG CACAACAGAT GTGGTCTGTA
    CAACAACTGC CGAGGCCCTT GCAATGGGAA AGATTGTCAT ATGTGCCAAT
    CACCCTTCAA ACGAGTTCTT CAAGCAGTTC CCTAATTGCC GCACCTATGA
    CAGTGGCGAG GAATTTGTAC TAACGCTGGA TGCTCTAGCA GAGCAGCCTG
    CTCCACTGAC TGACATGCAG AGTCATGACC TATCTTGGGA GGCCGCGACC
    GAGAGATTCA TGGAAGCCGC GGAGCTGAAC CTTCCTATCT CAGCAGAGCC
    AAGAATCCAT CAAACATCCA AGGTCTCTCT CCCTGCTTTT ATGAGGACTC
    GTAAACTGAA ACAGAGCTTG GAGGATGCAT CAGTTTACCT GCATCAAGCA
    CTCTCAGGAC TTGAAGTCAC CCGTCGCGCC TTCGGTGCTG TTCCGAAGAC
    GCTGCAACCT GATGAGCAGC TGTGCAACGA TCTAGGTTTG GCTCCCGCCA
    AGAAAAAGAG GTTGAAATTG AAGCTGATGA CCTGATGATG TAACTTCTCT
    TGAGCCCCTG ATTGCATCGT GTCATTTCCT TTTCTGCACA TTATATCCGA
    GGAGTATGTA TGAATCCTAA TGGAGGATCA GTGCATTTTC CATTAGTATG
    TTTACTTAGT TCAGGATGTA AATTACACTA CAAATGTAAT TGGACTATTG
    GAGACTTTGG AGTACTAGTA CTACTAACCT AGTGGCTTTA TTGAAAATTT
    AAAACTGTGA TGTGATTCTG CC

    Gene models with high sequence identity

    1. AT4G00550.1 [+] show detail - digalactosyl diacylglycerol deficient 2
      E-value: 0; Score: 634.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 1.9e-11
    HMMPanther GLYCOSYLTRANSFERASE 4.8e-06
    HMMPfam Glycosyl transferase, group 1 4.5e-08

    See the detailed result >

    AT4G00550.1

    Model type
    Protein coding
    Short Description
    digalactosyl diacylglycerol deficient 2
    Curator Summary
    encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.
    Computational Description
    digalactosyl diacylglycerol deficient 2 (DGD2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR