K16943

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16943

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16943

Determination of introduced cDNA(s)

  • J023146D17 - Rice Full-length cDNAs - Original: J023146D17

    full reading [+] show sequence

    Nucleotide sequence: J023146D17 - full reading 
    TTTGATCCAT TCAGAGTTAG CAAGCTCTTC TAATTCATAT ATAGAACTCA 
    GAATGGCAGG TGCTCCTCGA GGACTAGTTC TCCTCGGCGT TTGCGCCGTC 
    CTGATGGTGC TCGCCGTCAG TGGCGAAGCG GCGTCGGTCG TCATCGGCAC 
    GGCCAAGTGC GCCGACTGCA CCCGGAAGAA CATGAAAGCC GAGGATGCTT 
    TCAAGAATCT CCAGGTGGCG ATCAAGTGCA AGAACGGCAA TGGCGAGTAC 
    GAGAGCAAGG CCGCTGGAAA GCTTGACGGC TCCGGCGCTT TCAGCGTCCC 
    TCTCGACACC GACCTTCACA GCTCTGACTG CATTGCCCAG CTCCACAGCG 
    CAACCAACGA GCCATGCCCC GGGCAAGAGC CATCCAAGAT CGTGCCATTG 
    TCGGAGGGCA CCTTTGTCAC CGTCGCTGGC AAGACCAGCT ATCCGTCGGC 
    TTTGTGTGCG TCGGCGACCA TCTGCGGCCC CATCAAGAAG AAGATCATCG 
    ACCACTTCCA TAAGAAGCCG GTGCCACCGA AGCCGGATCC CAAGCCAGAG 
    CCGCCCAAGC CGAAGCCAGA GCCAGAGCAC CCCATCCTCG ACCACTTCCA 
    CAAGAAGGAG AAGGACTTCT TTGACCACTT CCACAAGAAG CCCGTACCAC 
    CCAAGCCTGA GCCAAAGTCG GAACCCAAGC CACAGCCCAA GCCACAGCCA 
    GCGCCTGAGT ACCACAACCC TAGCCCACCA GCGAAGCACT AAACATTATC 
    TACGTTTGGT CTTGTATGAT TTCGTGCCAT ATCAGTGTGT CCGCAGAATA 
    ACGCTTTCTA CCCCCGTGTG AGATTATACA TTGAAATATA ATGTACTTGC 
    TAGCTTTCAT CCGCAGGAGT TTTTTTTTTA AAGTGTGACC GGGTTCATTT 
    ATTGGATATC GCATGCATAT TAGCAGGGCA CGATGTGTAC TGTAATATCT 
    GCCTGTTGTT TTTATTTCTC TACCTAAATG AAGTTAACCA CAAAGGACAA 
    ACATAAATTC ACATG

    Gene models with high sequence identity

    1. AT4G38770.1 [+] show detail - proline-rich protein 4
      E-value: 1e-10; Score: 64.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pollen Ole e 1 allergen/extensin 2.5e-14
    FPrintScan PRICHEXTENSN 2.1e-09
    FPrintScan PRICHEXTENSN 2.1e-09
    FPrintScan PRICHEXTENSN 2.1e-09

    See the detailed result >

    AT4G38770.1

    Model type
    Protein coding
    Short Description
    proline-rich protein 4
    Curator Summary
    Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall. Transcripts are most abundant in aerial organs of the plant.
    Computational Description
    proline-rich protein 4 (PRP4); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 2 (TAIR:AT2G21140.1); Has 142477 Blast hits to 44863 proteins in 2266 species: Archae - 463; Bacteria - 33947; Metazoa - 50713; Fungi - 14839; Plants - 19672; Viruses - 4087; Other Eukaryotes - 18756 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR