K16949

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16949

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem internode (PO:0020142)
  • increased length (PATO:0000573)
    (Stem::Shape::long internode)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
stem internode (PO:0020142)
  • increased length (PATO:0000573)
    (Stem::Shape::long internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16949

Determination of introduced cDNA(s)

  • J033148H01 - Rice Full-length cDNAs - Original: J033148H01

    full reading [+] show sequence

    Nucleotide sequence: J033148H01 - full reading
    GACATTCTCC TCTCTCTCTC TCCCTCTCTC ATCCATTTCA ATTCTCTCTC 
    TTGACACAGC TACAAGACAA GCCACCTCCT CCCTCCCTCC TCTACTGAAC
    CAAGAAGAGG AGAGAGAAAG TAGAGGAGAG GGAGACAAGC AGACAGACAG
    AATTGCCTGC CAAGAAACGA GATACACACA CATCTAGAGA GAGAAAGTAG
    AGAGAGATCA AGAACAAGAA CAAGATCAAG AAGAGGAGAT CTGTGGCGAT
    GGGGATGAGG CCGGGTTGGG TAGGCGGGCT GGTGGAGGAG AGCTTCTTCG
    TGGGTTGCCC AGCGCACGAG AGCCGGAAGA AGAACGAGAA GAACATCTTC
    TGCCTCGCCT GCTGCACCAG CATCTGCCCT CACTGCGCCC CCTCCCATCG
    CCACCACCCT CTCCTCCAGG TGCGGCGGTA CGTGTACAAT GACGTCGTCC
    GCCTCGGCGA CCTCGAGAAG CTCATCGAAT GCTCCTACGT CCAGCCGTAC
    ACGATCAACA GCGCGAAGGT GATATTCCTG AAGCCGAGGC CGCAGTCGAG
    GCCGTTCAAG GGGTCAGGCA ATGTGTGCCT CACCTGCGAC CGCATCCTGC
    AGGAGCCCTT CCACTTCTGC TCCCTCTCCT GCAAGGTGGA CCACGTCATG
    GTCCACGGTG GCGGCGACCT CTCCAACATC ATCCTCCTCC ACCCCCACCA
    CCACCCCAAC ACCGCCACCG CCTCGGCCTT CCCCCGTTTC GAGGACCTCC
    GTGTCGGCGC TGACGATGAT GCTGCCGCTA TCACCGCCGT CACGCCAGAA
    GGACGTTATG GTGGCGGCGG TGGTGGGTCT AGTGATAATG GCGGCGGTGA
    TGGCGGTGGC GGCGAGGTGG GGGAGGTGAA GAGGAAGAAG AAGAAGGGGG
    GAGGGTTCTT CCCCCAGATT CTGGGGCTGG GGAGTAGGAG GAAGGGTGCA
    CCCCACAGAT CACCCCTGTC CTAAGCCTAA TCACCACTTT GCCCCCCTAG
    CTACATATAT GTGCCATTAA TAGCAGCTAG CTGTTAATTA ATTACTAGTA
    GTAGCTAAGC TAGCCCCTAG CTGTACTAGC TAGTTCTAGC TTTTAGTGTG
    TCATGTCATT ATAGCCCTAT GATTAGCCAT GTAGAGAGAG ATGAGTGTGT
    GTGTTAATTT GTGTGTTGGT TGGTTGGTTG GATGGGTTCT TTGGGAGGTA
    GGGGCTTTTG TTTGTGTGAT CTAGCTTAGC TTAAGGTTAA TTAGCTTAGC
    TAGGGCCACT TCCAAGCTAA TAGGCACTTA GGCAGTGTTT TGATGGGAGA
    CAGAGAGGGA GGGAGAAAGA GAGGAAAAAA GCAAGCAATT CTCCTACTGT
    TACAGGCCTA GGTAGCTGAG TCACAGGTAT GTGGGGCCCA GGTTGCATGG
    CTTCCCCTAC ATGATAGTGT GTGGCTACCA ATTTTGTACT TGATGTAACA
    GCAGGGTTAC TTGCATACAC TTCCATAACC ACATATATAA TTAATTAATA
    TCGTTCCTC

    Gene models with high sequence identity

    1. AT1G31040.1 [+] show detail - PLATZ transcription factor family protein
      E-value: 5e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF597 8.6e-38
    ProfileScan Zinc finger, B-box 9.143

    See the detailed result >

    AT1G31040.1

    Model type
    Protein coding
    Short Description
    PLATZ transcription factor family protein
    Computational Description
    PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT2G12646.1); Has 411 Blast hits to 411 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 411; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR