K17004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17004

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17004

Determination of introduced cDNA(s)

  • J013049O12 - Rice Full-length cDNAs - Original: J013049O12

    full reading [+] show sequence

    Nucleotide sequence: J013049O12 - full reading
    TGCCTCGTCA AGTCAGTCTC CCTCTCCCCG CGCGGCCGCG CCCCACCCAC 
    ACAAACCCTC CACCACCACC ACCCACCCAC CCATCCGTTG GCCACCGGCG
    GCGTGGGCGG AGGGCGGCGG GCCGGCGGCC ATGGGGAAGA ACCTGCGTAT
    CAAGACCGGC AACCGCGCCC CGCTCCTCGC CCAGGGGGAG ACGTCGAGGG
    CGCTCTCCGA TCTCGAGGAG GGGAGCAACG TCCAGCCGGA GAACGTCGGG
    TTCTGCCGCG TCATCAAGTT GGCGAGGCAT GACGCGGGGA AGCTGGTTAT
    TGCCACCATG GCGCTGCTCG TCGCTTCGCT CAGTAACATT CTCGTTCCGA
    AATATGGTGG AAAGATAATT GACATTGTTT CAAGAGATGT TCGGCGTCCA
    GAAGATAAAG CTCAAGCCCT AGATGATGTG ACGGGCACAA TATTGTATAT
    TGTCATAATC GTCGTAACTG GTTCAGTTTG CACAGCGCTT CGGGCATGGC
    TATTCAATTC TGCTAGTGAG AGAGTAGTTG CTCGACTGAG GAAGGACTTG
    TTTAGTCATC TAGTAAATCA GGAAATAGCA TTTTTTGATG TCACTAGAAC
    AGGAGAGCTA TTAAGCAGGC TTTCTGAAGA TACGCAAATA ATAAAGAATG
    CTGCTACAAC TAACCTTTCA GAAGCATTGC GCAATATTAC TACTACGTCT
    ATTGGTCTTG GTTTTATGTT TGCAACTTCA TGGAAATTAA CATTGCTGGC
    ACTTGTAATT GTTCCGGTTA TATCAATTGC TGTGCGCAAA TTTGGACGCT
    TTCTTCGTGA ACTTTCACAT CAGACACAGG CAGCAGCTGC TGTTGCTTCA
    TCCATAGCCG AGGAATCTTT TGGTGCCATT CGCACAGTAA GATCGTTTGC
    TCAGGAGAGT CATGAAGTCT TACGATATGG TGAGAAAGTA GATGAGACAC
    TGAAACTCGG TCTCAAGCAA GCTAAAGTTG TTGGCATGTT TTCTGGAGGG
    CTCAATGCAG CATCAACCCT ATCAGTGGTC ATTGTAGTTA TTTATGGCGC
    TAACTTAACC ATCAACGGTT ACATGACAAC TGGTTCTCTC ACATCGTTCA
    TTTTGTACAG CCTTACAGTT GGGTCGTCAG TCTCTGCCTT GTCAGGACTA
    TACACAACTG TAATGAAAGC ATCGGGCGCA AGCCGACGAG TATTTCAACT
    TCTGGACCGT GTTTCCTCAA TGGCAAATTC CGGGGACAGA TGCCCAACAA
    ATGAAAATGA TGGGGAGGTT GAGCTCGACG ATGTCTGGTT TGCATATCCC
    TCTCGGCCTT CTCATATGAT TCTGAAGGGA ATAACGTTGA AGTTAACACC
    AGGTTCAAAG GTAGCTCTTG TTGGGCCAAG TGGTGGTGGG AAAACTACAA
    TAGCAAATTT AATTGAACGG TTTTATGACC CTCTAAAAGG AAGAATCTTG
    CTTAATGGAG TGCCTTTGCC AGAGATTTCA CATCAGTTTC TCCACAGGAA
    GGTTAGCATT GTTAGTCAGG AGCCTGTGCT CTTTAACTGC TCCATCGAAG
    AGAATATTGC TTACGGATTA GAGGGCAAAG CCAGCTCTGC TGACGTTGAG
    AATGCAGCTA AAATGGCAAA CGCCCACAAT TTCATATGCA GTTTTCCAGA
    CCAATACAAG ACTGTAGTTG GAGAGCGAGG CATCAGGTTA TCAGGTGGGC
    AGAAGCAGAG AGTCGCCATT GCAAGAGCTT TGCTTATGAA CCCTCGAGTG
    CTCCTCTTGG ATGAAGCTAC CAGTGCACTA GACGCTGAAA GCGAGTATCT
    TGTTCAGGAT GCAATGGACT CTCTGATGAA AGGGAGGACC GTGCTTGTGA
    TAGCTCACCG GCTATCCACC GTCAAGAGCG CCGACACCGT CGCCGTCATC
    TCCGACGGCC AGATAGTGGA GAGCGGCACG CACGACGAGC TCCTCAGCCG
    CGACGGCATC TACACGGCCT TGGTGAAGAG GCAGCTGCAA GGGCCAAGGT
    TCGAAGGCAC CAGCAACGCA ACAGCCGAGA TAGAACCCAT AAGCAATGGC
    CAATAGACAA ATATAGCCTC TTCTGCATAG TACTTGATTT TTGTCCCTTC
    TCCGGGTAGG TGGACACCGT TTCCTGATGA TCCACTGAAT GTAAACGGAT
    ATGAATGCAT CCACTCTGAA AATGCCACGC AGTCCCGCAC AACAGTACAA
    ACACATTCTA ATTGTCACGA GCTGCTGCTG TGTCTTACAC AATTAACTCG
    CTTATTTTTT TATAGAATGT AATTATGCCT TGATGGCGTG ATGTTGCGCG
    GATGGGTAAT GACCGCAATC AATATTGTGT TGCTTGATTG CTTCTC

    Gene models with high sequence identity

    1. AT5G39040.1 [+] show detail - transporter associated with antigen processing protein 2
      E-value: 0; Score: 886.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ABC transporter, transmembrane domain, type 1 4.3e-77
    superfamily P-loop containing nucleoside triphosphate hyd 1.7e-71
    ProfileScan ABC transporter-like 26.891
    ProfileScan ABC transporter integral membrane type 1 57.377
    PatternScan ABC transporter, conserved site 0
    Gene3D no description 2.1e-80
    HMMSmart ATPase, AAA+ type, core 1.1e-17
    HMMPfam ABC transporter, transmembrane domain 4.7e-55
    HMMPfam ABC transporter-like 3e-21
    HMMPfam Protein of unknown function DUF1602 0.000000000021
    HMMPanther ATP-BINDING CASSETTE, SUB-FAMILY B, MEMBER 10 3.7e-292
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 3.7e-292

    See the detailed result >

    AT5G39040.1

    Model type
    Protein coding
    Short Description
    transporter associated with antigen processing protein 2
    Curator Summary
    Encodes a member of TAP subfamily of ABC transporters that is located in the vacuole. Mutants are hypersensitive to aluminum and the gene product may be important for intracellular movement of some substrate, possibly chelated Al, as part of a mechanism of aluminum sequestration.
    Computational Description
    transporter associated with antigen processing protein 2 (TAP2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to aluminum ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR