K17006

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17006

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17006

Determination of introduced cDNA(s)

  • J033118E02 - Rice Full-length cDNAs - Original: J033118E02

    full reading [+] show sequence

    Nucleotide sequence: J033118E02 - full reading 
    GATTCTTCTC CTTCTTCTCC CTCCGCGTCG CATTCGCATC ACCCCCCCGA 
    AACCCTAGAC CCACCACCAC CACCACCATC CCCGAGCTCG CGGAGAGGCA 
    GCGAGAGCGA GAGGTAGCTG CTAGTAGGCG TCGGGCGAGG AGATGTACGC 
    GGACCAGATC TCCACCGGCC GGAAGCGCTC CATCCACGAC CGCATCGACG 
    GCGACCAGCC CGCCGCCCGC GCTGGCGCCG GCGCCGGCGG CCGGGGGGCC 
    CGTAACCCGC CGTCCAAGAG GCAACGGCAA ACTGATGAAA AATGGAAGCA 
    TGATCTTTAC CGGGAAGACG ATGAACCAGC TTCAAAATCA ATTGATCCAC 
    GGGATTTGCG ATTGAAGCTT CAGAAGAAAA GCTCTCAGCA AAGCTTTGCT 
    GGCCAAAGGG GTTCTGGTGT ACGTGATCTA CGTGAGATGC TTTCTGGAAC 
    AATGCACCCA CAGCCAGTCA ATGCGGACCC TCCAAAGGCA AAGCCATCAT 
    CAGAGATCGT GAAAGTCACA AGGCGTGAAA ATGCAGATGT AATGCCTGTA 
    CGTCAAAGTA AGAAAGTACC AAAACCGACG TCATCGAAGA AGACATCTCA 
    GCCGAAGGCT GACAGTCCAC TTGATATTTT CCTGAAATCT CTTGGACTTG 
    AGAAGTACTC GATTACCTTC CAGGCAGAAG AGGTTGACAT GGCAGCCCTA 
    AGACACATGA CTGACAGTGA TCTTAAAGCT TTGGGCATTC CGATGGGTCC 
    CCGGAAGAAG ATCATGCTTG CCTTGGAATC GAGAGCGTAG GGAGGGCTGG 
    CGTGTAATGT AGAAAGGCTG GGCGATTAGG AATTGTATGC TCCTCTGCTT 
    GCTTGGTAAA CCCAAAGTGT CCGCATGTCC TGGATACGGC GCAAGAACAA 
    AAGCGCTGGG CGTCTTGTAA TGCGTCTTCT GACTAGTTGA GCATTCCGCA 
    TTCTCAGCCA GTTTAGGATG TTTTAGAGGC TGGATGAAGG TTGACAATGT 
    AATATTATTA GTCTCCTGTT AATTTTTATC TGGTCGGCTT GCTTGTCAGG 
    ACTCAGGACC AGCTGATT

    Gene models with high sequence identity

    1. AT3G07170.1 [+] show detail - Sterile alpha motif (SAM) domain-containing protein
      E-value: 7e-41; Score: 164.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Sterile alpha motif 1.6e-05
    superfamily Sterile alpha motif homology 5.2e-11
    ProfileScan Sterile alpha motif 8.562
    HMMPanther SUBFAMILY NOT NAMED 1.3e-07
    HMMPanther SCP160 1.3e-07
    HMMPfam Sterile alpha motif, type 1 6.6e-14

    See the detailed result >

    AT3G07170.1

    Model type
    Protein coding
    Short Description
    Sterile alpha motif (SAM) domain-containing protein
    Computational Description
    Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT5G48680.1); Has 516 Blast hits to 515 proteins in 77 species: Archae - 0; Bacteria - 10; Metazoa - 341; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR