K17007

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) dark green (PATO:0001249) (Rosette leaf::Color::dark)
	petal (PO:0009032)	abnormal (PATO:0000460) (Flower::Shape::petal)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17007

Determination of introduced cDNA(s)

J033127A22 - Rice Full-length cDNAs - Original: J033127A22

full reading [+] show sequence

GGCTCACCGC ACGGCACACG CGCCCGGGGG ATTTGGAAAT TGGAAATTTC 
AGATCCCAGA TCTCGTCTCG CCGATCTCGC CCTCCGCTAA GCCATGGGTT 
CGGTTGTGGA TGCTCCAACA GTTGTGGCTG GACAGGAGGA GGTCACTGAC 
AACATGTTGG GTGACAAGAA AGTTACAGTT GTATTTGTTC TAGGTGGTCC 
TGGGAGTGGA AAGGGCACAC AGTGTGCCAA CATTGTTGAA CACTTTGGAT 
TCATTCATCT TAGTGCTGGA GACCTTTTGC GTGCAGAGAT CAAATCTGGC 
TCTGAGAACG GAACTATGAT CGAGAACATG ATAAAGGAGG GAAAGATTGT 
TCCATCTGAG GTAACTATAA AACTCTTGCA GGAAGCCATG ATTAAAAGTG 
GAAATGATAA GTTCCTTATT GATGGATTTC CAAGGAACGA AGAGAATCGT 
GCTGCATTTG AGAACGTTAC AAAAATAACT CCTGCGTTTG TGCTATTCTT 
CGATTGTTCT GAGGAAGAGA TGGAAAGACG TCTTTTGGGA CGCAATCAGG 
GAAGAGTTGA CGATAACATT GAGACTATCA GGAAAAGGTT CAAAGTTTTT 
GTTAATCCAG TTTGCCTGTC ATTGAGTACT ATAATGCAAA GGACAAGGTT 
AAAAAGATTG ATGCTGCAAA ACCAATTCCT GAGGTGTTTG AAGATGTCAA 
AGCCATTTTC GCTCCATATG CGCCAAATGC CGCTTAGAGC AATAGAAAGG 
ACCACATGAG TGATAAATTG CACCAACTTT AGAAAAGGCT TTGCTCTCAG 
GTGTGACTAC AAATCTGTGA TTACGAAACC GTTGATATAG AAGAGAGTTT 
TGGCTCATAT GAGCTACCTG CATACCCGTA GGCAATTTGA TTTGTTACTT 
GCAATAATTA ATTTTGATCC CCATTTCCTG CTAGATTAAC TTTTACGAGA 
GTTGGCGTAT CGTATGTAAT GCTGTACTTG TACCAATGTA TCATTTACCT 
CATGGACGAT GAAACTTTGT CCTCCCGCCA GTTTCTGGTG GTATAATACA 
GAAAGTGGAA CTTCCGAATT TTTTTTTGGT TAGTTTCTAA AACAATGTTC 
ACTGAACAGC TAATAATTAT TCAATTTGTT ATTG

Gene models with high sequence identity

AT5G26667.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
E-value: 7e-73; Score: 36.60

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.5e-44
PatternScan	Adenylate kinase	0
HMMPanther	UMP-CMP KINASE (UMP-CMPK)	1.4e-92
HMMPanther	Adenylate kinase	1.4e-92
superfamily	P-loop containing nucleoside triphosphate hyd	1.5e-37
FPrintScan	Adenylate kinase	1.4e-25
FPrintScan	Adenylate kinase	1.4e-25
FPrintScan	Adenylate kinase	1.4e-25
FPrintScan	Adenylate kinase	1.4e-25
HMMTigr	UMP-CMP kinase	8.2e-94
HMMPfam	Adenylate kinase	5.1e-44

See the detailed result >

AT5G26667.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary: encodes a uridine 5'-monophosphate (UMP)/cytidine 5'-monophosphate (CMP) kinase.
Computational Description: PYR6; FUNCTIONS IN: uridylate kinase activity, cytidylate kinase activity; INVOLVED IN: pyrimidine ribonucleoside monophosphate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G60180.1); Has 14045 Blast hits to 13848 proteins in 4925 species: Archae - 109; Bacteria - 9053; Metazoa - 1251; Fungi - 483; Plants - 459; Viruses - 0; Other Eukaryotes - 2690 (source: NCBI BLink).
Link: InterPro Scan - TAIR