K17008

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17008

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17008

Determination of introduced cDNA(s)

  • J033024N22 - Rice Full-length cDNAs - Original: J033024N22

    full reading [+] show sequence

    Nucleotide sequence: J033024N22 - full reading 
    GTCACACAGT GAGCGGCGGC TACCCGATCT GGTACTGGTA GTAGCAGGAA 
    CGACGATGGC GGAGGAGTCA AGGAGGAGGA GCGGCGGCGG CGTCAGGGTG 
    TGCGTCACCG GCGGCGCTGG GTTCATCGGC TCGTGGCTCG TCAAGAAGCT 
    CCTCGGCGCC GGCTACACCG TGCACGCCAC CCTGCGAAGC ATAGGGGACG 
    AGGTGAAGGT GGGCCTCCTG CGGCGGCTCG TCCCCGGCGA CGCGCCGCCG 
    GAGCGGCTGC GCCTGTTCGA GGCCGACCTC TACGACGCCG CCACCTTCGC 
    TCCGGCCATC GCCGGCTGCC AGTTCGTCTT CCTCGTCGCC ACGCCCTTCC 
    TCCATGACGC CACCAGCACG AAGTACAATA ACACGGCGGA GGCGGCGCTG 
    GACGCGGCAC GGGTGATCCT CCGGCAATGC GAGGAATCCA GCACGGTGAA 
    GCGCGTCATC TACACGAGCT CCATGGCTGC GACCTCGCCG CTCAAGGAGG 
    ACTCCACCGG CTTCAAGGAC TCCATCGACG AATCCTGCTG GACGCCGCTC 
    GCCGTCGACT ACCCTTACCG GAGCGCACGG TTCGATGAGT ACATCCTGTC 
    GAAGCTGCTG TCGGAGAAGG AGCTGCTGGG GCACAGCCAC GCTGGCGAGA 
    GGCGGAGGCC GGCGGTCGAG GTGGTGACGG TGCCGTGCTC CGTCGTCGCC 
    GGCGGGACGC TGCAGGGGCA GTCGACGACG AGCCTGGACT GCGTCGTGTC 
    GCCGGTGTCC CGGGACGAGG GCCGCTTCCG GGCGCTCAGG CTGCTGCAGA 
    GGCTGATGGG GTCGGTGCCG ATGGTGCACG TCGACGACGT CTGCGACGCG 
    CTCGTCTTCT GCATGGAGCA GCCGTCCCTC ACCGGCCGGT TCCTCTGCTC 
    CGCCGCGTAC CCGACTCTCG ACGACATCGT CGAACACTTC GCCGGCAAGT 
    ACCCTCACCT CGACCTCCTC AAAGAAACGG AGACATTGCC GAGCATTCAA 
    GCTCACACTG ATAAGCTGGG GGAGCTGGGG TTCAAGTACA AGTACGGGAT 
    GGAGGAGATA CTGGACGAGA GCGTGGAATG CGCGGTGAGA CTTGGTTGCC 
    TTGATGCGTC CAAGCTTAGT TTACAAGGAT GATAATATCA TCCTGATTAG 
    TGCAATTTAC CATCATTATT GTGTTGGTGT GCCTCTTCAG GCGTTCTAAT 
    TACTATACTT AAAATAAAAA GGAGCAATGG AGCATTCCTT GGCGTCATTG 
    GTTTACAGTC GTGTACTCGT GTACTACCAG CAATCTGAAA TCTGAACTTC

    Gene models with high sequence identity

    1. AT4G27250.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 5e-40; Score: 162.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NADHP HC TOXIN REDUCTASE 3.1e-162
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 3.1e-162
    Gene3D NAD(P)-binding domain 5.6e-24
    superfamily NAD(P)-binding domain 4.8e-42
    HMMPfam NAD-dependent epimerase/dehydratase 1e-18

    See the detailed result >

    AT4G27250.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: dihydroflavonol 4-reductase (TAIR:AT5G42800.1); Has 11174 Blast hits to 11160 proteins in 1934 species: Archae - 191; Bacteria - 4752; Metazoa - 248; Fungi - 837; Plants - 2457; Viruses - 63; Other Eukaryotes - 2626 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR