K17013

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17013

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17013

Determination of introduced cDNA(s)

  • J013154N05 - Rice Full-length cDNAs - Original: J013154N05

    full reading [+] show sequence

    Nucleotide sequence: J013154N05 - full reading 
    GAGCGCCGCC GCCGTCGCAG CCTCCCTTCT CCTCTGCTCG CCCCGCCGCC 
    GCCGCCGTCT CCGCGCCACC GCCGCCCCCG AGATGGCCCC GAAGAAGGAC 
    AAGGCCCCGC CGCCGTCGTC GAAGCCGGCC AAGTCCGGCG GTGGCAAGCA 
    GAAGAAGAAG AAGTGGAGCA AGGGAAAGCA AAAGGAGAAG GTGAACAACT 
    CGGTGCTGTT CGACCAGGCC ACCTACGACA AGCTGCTCTC CGAGGTGCCC 
    AAGTACAAGC AGATCACCCC CTCCGTTCTC TCTGAGAGAC TCAGGATCAA 
    CGGGTCCCTG GCTCGTAGGG CCATCAATGA TTTAATGACA CGGGGCCTAA 
    TCCGCATGGT GTCGGTTCAC TCAAGCCAGC AGATCTACAC CAGGGCAACC 
    AACACCTAAG TGTGAGGGTG ACATGCATCT TTGTTTGCCC TGAATGTGTA 
    CGGGGGGCTT GCCTACTCTA GAACAGCTGT TACCTTTGTC GAGTTTGCTA 
    ATGTTATGTT AAATGAGCTA CTTGTGATGG TCAGCATCTC TATATGGCTG 
    AAACATTTCA GAGATTTTGG TTATTAGTTG AGTACTGTTC TTGTTTGCCC 
    TATATAACTT TTTCCGCCC

    Gene models with high sequence identity

    1. AT2G21580.2 [+] show detail - Ribosomal protein S25 family protein
      E-value: 2e-27; Score: 119.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUBFAMILY NOT NAMED 1.6e-65
    HMMPanther Ribosomal protein S25 1.6e-65
    BlastProDom Ribosomal protein S25 8e-33
    HMMPfam Ribosomal protein S25 1.3e-46

    See the detailed result >

    AT2G21580.2

    Model type
    Protein coding
    Short Description
    Ribosomal protein S25 family protein
    Computational Description
    Ribosomal protein S25 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: Ribosomal protein S25 family protein (TAIR:AT4G39200.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR