K17017

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17017

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17017

Determination of introduced cDNA(s)

  • J033049I18 - Rice Full-length cDNAs - Original: J033049I18

    full reading [+] show sequence

    Nucleotide sequence: J033049I18 - full reading
    GACGGTGCGG TTTCCCTTTC CCATATAAAT CCCCCCCGCG TCCGCTGCGA 
    ACTACTAAAC CGAGAGAGAG AGGCGCACAC ACGAAGACGA GGCGGCGATG
    GTGAGCGGCG GAGGAGTAGC GGCGGAGAAC GGCGAGATGG TGGGGAACGG
    GGAGGGGAGG AAGGGTGCGG GGGCGAGCGT GCTGGTGACG GGGGGAGCGG
    GGTACATCGG GACGCACACG GTGCTGCGGC TGCTGGAGAA GGGGTTCGCG
    GTCACCGTCG TCGACAACTT CCACAACTCC GTCCCGGAGG CGCTCGACCG
    CGTCCGCCTC ATCGCCGGCG CCGCCCTCTC CGCCCGCCTC GACTTCATCG
    CCGGGGATCT CAAGAGCAAG GACGACATGG AGAAGGTGTT CGCCGCCAAG
    AGGTATGACG CCGTGATCCA CTTCGCCGGG CTGAAGGCGG TGGGGGAGAG
    CGTCGCGCAC CCGCAGATGT ACTACGAGAA CAACGTCGCC GGCACCATGA
    ACCTCTACTC CGCCATGACC AAGTACGGCT GCAAGAAGAT AGTGTTCTCG
    TCGTCGGCGA CGGTGTACGG CCAGCCGGAG AAGACCCCCT GCGTCGAGGA
    TTCCAAGCTG AGCGCTCTCA ACCCATACGG CACCACCAAG CTCGTCCTGG
    AGAACTACTT CCGGCAGGTG CAGGCCGCCG ACCCGGAGAT GAGGGTGATC
    CTGCTCAGGT ACTTCAACCC CATCGGCGCT CACCGGAGCG GCGACATCGG
    GGAGGACCCC AGGGGCATCC CCAACAACCT TCTTCCGTAC ATCCAGCAGG
    TCGCCGTCGG CCGCCGCCCC GAGCTCAACG TCTACGGCGT CGACTACCCA
    ACCAGGGACG GCACCGCGAT CAGGGATTAC ATACATGTAG TGGACCTTGC
    CGATGGCCAC ATTGCCGCAC TGGAGAAGCT CTTCGCTACT CCTGACATTG
    GTTGTGTGGC TTACAATCTA GGAACAGGGT GTGGAACAAC GGTGCTCGAG
    GTGGTGAAGG CGTTCGAGGA GGCGTCCGGA AAGAAAATTC CTATCAAGAT
    TTGCCCCAGA AGACCTGGAG ATTGCACTGA GGTTTACGCT TCCACTGACA
    AGGCCAAGAA GGAGCTCGGA TGGAGTGCTC GGTTTGGAAT AGAGGACATG
    TGCAGGGACC AGTGGAATTG GGCCAAGAAG AATCCGTACG GATACAGCGC
    CAATGCTGAG CAGAATTAGG GCGATCATAT TACCACTTAT ATAGTACTAG
    TATCAAAATT GTCCATGGTC TTATGAACTG TGTGACTAGA AAATGTTAAT
    AAGACATGCG TGCCTCTTAA GTGGAGTATA CCAATTCTTA TTTAGTCGAA
    TCCGTTGTGA TTTTAGATAC TGGCAAATGT TAATCAGGTT TATTTAAATA
    CTATACTAGT AGCAAGATCA AATTG

    Gene models with high sequence identity

    1. AT1G12780.1 [+] show detail - UDP-D-glucose/UDP-D-galactose 4-epimerase 1
      E-value: 2e-147; Score: 519.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr UDP-glucose 4-epimerase 3.5e-160
    HMMPanther UDP-glucose 4-epimerase 3e-179
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 3e-179
    superfamily NAD(P)-binding domain 8.8e-103
    Gene3D NAD(P)-binding domain 9.2e-62
    HMMPfam NAD-dependent epimerase/dehydratase 1.6e-53

    See the detailed result >

    AT1G12780.1

    Model type
    Protein coding
    Short Description
    UDP-D-glucose/UDP-D-galactose 4-epimerase 1
    Curator Summary
    Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.
    Computational Description
    UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress, galactose biosynthetic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (TAIR:AT1G63180.1); Has 42430 Blast hits to 42420 proteins in 2995 species: Archae - 799; Bacteria - 25009; Metazoa - 650; Fungi - 500; Plants - 1081; Viruses - 38; Other Eukaryotes - 14353 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR