K17020

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)
T2
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17020

Determination of introduced cDNA(s)

J013098E18 - Rice Full-length cDNAs - Original: J013098E18

full reading [+] show sequence

GAATGGAGAG AAGAGGCGCC GGTCCCCCGT TGGACCGGAG CTCGCGCGCG 
GGAGCCCGAG CCAGCCGCCG CTTTGACCTA TAAATAAGAG GAGGAGAGAG 
CTCGGGGGTT GGACTGGGTG AAGAAGGGGC AAGGAAGGAA GGGGAGGGGA 
GGGGTTGGGG CGATGGCTTG GTGGAGCTGC TTCGGCTGCG GCCCGTCGAT 
CGCCGCCGAA GGCGAGGTCC GGCTGCCGGA GCCGTTCCAG CTGCCGGCGC 
CCTTGCCCGA CTGGCCGCAA GGAGGAGATT TCTCTAAGGG CACAATATGC 
ATAGGCGAGC TCGAGGTTGC AAGTATTACC AAATTCCAGA GTATATGGAG 
CTGCTCAGGA GCTACATTCT ATGAGCCGCA AGAAATCCCT GATGGTTTCC 
ACTGCCTTGG GCACTATGCC CAACAGAATG ACCGACCTTT ACAGGGATTT 
CTTCTTGTGG CAAGGGAAGC GGCTAGCTGC CAATCGATCA ATCTCAAGCC 
TGCTCTTGAG AAACCATTAG ATTACACCCT TGTTTGGACT AGTACTGACT 
TGAATGATGA TGACAATAGT GATTGTGGTT GCTTCTGGTC ACCATCACCA 
CCGGATGGTT ATGAAGCTCT CGGCTATGTG GTTACTAGAG GACCGAAGAA 
GCCCTCATTA GATGCAGTTC GATGTGTGCG GGGTGACCTC ACTGATGAAT 
GTGAAAACTT TAAGTCAATC ACAAATATGG GAGGTAATTG CTACATCTGG 
AATACAAGGC CTTGCCACCG AGGGATGGCA GGAAGAGGGA TACCTGTTGG 
TACATTCTTC TGTGGAACAG ATACAGAAGA ATCAGACATT CCCTGCTTGA 
AGAACTTTGA TTCAAGTTTG AGTTCCATGC CTAATTTAGA GCAGATCAAA 
GCACTGATCG AGCACTATGG ACCAACTGTT TTCTTCCACC CGCAAGAGAT 
CTACTTACCA TCGTCAGTCT CTTGGTTCTT TGAGAATGGA GCTACGCTCC 
ACAAGAAAGG TAAAGAAATG GGAGATGTAA TTCTTGCTAG TGGTTCGAAC 
CTTCCTGCTG GTGGGACAAA TGACGGTGAG TACTGGATTG ATATTCCTGA 
TGGTGATAGG AATGAATATG TCAAAGCTGG TAATCTGAAG AGTGCTGAGC 
TCTATGTGCA TATTAAGCCG GCTCATGGAG GAACTTTCAC TGACATTGCG 
ATGTGGGTGT TCTGCCCATT TAATGGGCCA GCAACAATAA AGGTCGGATT 
TGCTAGCTTT GCTCTACAGA AAGTCGGCAG GCATACTGGT GACTGGGAGC 
ATTTCACCCT CCGTATAAGT AACTTCTCAG GAGAGCTCTC ATCTATCTAC 
TTCTCACAGC ACAGTGGAGG CGACTGGGTG GATGCATGTG ATCTGGAGTT 
CATCTCAGGA AACAAAGCCA TCGTTTACTC AGCGAAGGAT GGCCACGCAA 
GCTATGCGCA CCCTGGATGT TATCTGTTGG GATCTGAGAA GGCTGGTGTT 
GGGGTAAGAA ACGATGCAGC ACGAAGCGAT ATTTTGGTCG ATTCGAGCAC 
AAGGTATAAG ATCATCTCTG CGGGAAATCT GGGAGATGCC GTTATCGAAC 
CATGCTGGCT GCAGTACATG AGAGAATGGG GCCCGACCGT GGAATACAAC 
TCACGGTCGG AGATAGACGC TGTGCTTAGC TTCTTGCCCT TCTTTCTTCG 
GTTCACAGCT GAAGCAATAC TGAACAGTCT TCCGGTGGAG CTGTACGAGG 
AGGAAGGACC AACTGGACCA AAGGAGAAAA ACAACTGGGA AGGCGATGAG 
AGAGGCTAGA AGATGTTTCC AACTTCAAAT ATATGCTTCA TAATTTGTTC 
CAGAATCCAG ATAGCTCTAT AGATATGTAC CCTAAGGGTG CTGTAATAGT 
GATATTGGGA TCGAACGATC GATATGCTTT GCCAAGGCAT TTCAGTTCAT 
AGAGTTTGTA GGTGAAATGC TGGCAAAGCT GAAGGTTGAA GAGGTAATCA 
CGTTATGTTG TCCTGTTTGA TCATCTGGCC TGTTTGTACC TTGTGTCAGC 
TATAACTCTG TTTCTAAGAA CCATAAACTA AAGCCGACAT AGTCGACAAA 
AGCTACTGAC CATGTGAGCC TCTCTTTCCT

Gene models with high sequence identity

AT3G04350.1 [+] show detail - Plant protein of unknown function (DUF946)
E-value: 0; Score: 640.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PRE-MRNA PROCESSING-RELATED	3e-280
HMMPanther	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	3e-280
HMMPfam	Protein of unknown function DUF946	1.4e-253

See the detailed result >

AT3G04350.1

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF946)
Computational Description: Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link: InterPro Scan - TAIR