K17020

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17020

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17020

Determination of introduced cDNA(s)

  • J013098E18 - Rice Full-length cDNAs - Original: J013098E18

    full reading [+] show sequence

    Nucleotide sequence: J013098E18 - full reading
    GAATGGAGAG AAGAGGCGCC GGTCCCCCGT TGGACCGGAG CTCGCGCGCG 
    GGAGCCCGAG CCAGCCGCCG CTTTGACCTA TAAATAAGAG GAGGAGAGAG
    CTCGGGGGTT GGACTGGGTG AAGAAGGGGC AAGGAAGGAA GGGGAGGGGA
    GGGGTTGGGG CGATGGCTTG GTGGAGCTGC TTCGGCTGCG GCCCGTCGAT
    CGCCGCCGAA GGCGAGGTCC GGCTGCCGGA GCCGTTCCAG CTGCCGGCGC
    CCTTGCCCGA CTGGCCGCAA GGAGGAGATT TCTCTAAGGG CACAATATGC
    ATAGGCGAGC TCGAGGTTGC AAGTATTACC AAATTCCAGA GTATATGGAG
    CTGCTCAGGA GCTACATTCT ATGAGCCGCA AGAAATCCCT GATGGTTTCC
    ACTGCCTTGG GCACTATGCC CAACAGAATG ACCGACCTTT ACAGGGATTT
    CTTCTTGTGG CAAGGGAAGC GGCTAGCTGC CAATCGATCA ATCTCAAGCC
    TGCTCTTGAG AAACCATTAG ATTACACCCT TGTTTGGACT AGTACTGACT
    TGAATGATGA TGACAATAGT GATTGTGGTT GCTTCTGGTC ACCATCACCA
    CCGGATGGTT ATGAAGCTCT CGGCTATGTG GTTACTAGAG GACCGAAGAA
    GCCCTCATTA GATGCAGTTC GATGTGTGCG GGGTGACCTC ACTGATGAAT
    GTGAAAACTT TAAGTCAATC ACAAATATGG GAGGTAATTG CTACATCTGG
    AATACAAGGC CTTGCCACCG AGGGATGGCA GGAAGAGGGA TACCTGTTGG
    TACATTCTTC TGTGGAACAG ATACAGAAGA ATCAGACATT CCCTGCTTGA
    AGAACTTTGA TTCAAGTTTG AGTTCCATGC CTAATTTAGA GCAGATCAAA
    GCACTGATCG AGCACTATGG ACCAACTGTT TTCTTCCACC CGCAAGAGAT
    CTACTTACCA TCGTCAGTCT CTTGGTTCTT TGAGAATGGA GCTACGCTCC
    ACAAGAAAGG TAAAGAAATG GGAGATGTAA TTCTTGCTAG TGGTTCGAAC
    CTTCCTGCTG GTGGGACAAA TGACGGTGAG TACTGGATTG ATATTCCTGA
    TGGTGATAGG AATGAATATG TCAAAGCTGG TAATCTGAAG AGTGCTGAGC
    TCTATGTGCA TATTAAGCCG GCTCATGGAG GAACTTTCAC TGACATTGCG
    ATGTGGGTGT TCTGCCCATT TAATGGGCCA GCAACAATAA AGGTCGGATT
    TGCTAGCTTT GCTCTACAGA AAGTCGGCAG GCATACTGGT GACTGGGAGC
    ATTTCACCCT CCGTATAAGT AACTTCTCAG GAGAGCTCTC ATCTATCTAC
    TTCTCACAGC ACAGTGGAGG CGACTGGGTG GATGCATGTG ATCTGGAGTT
    CATCTCAGGA AACAAAGCCA TCGTTTACTC AGCGAAGGAT GGCCACGCAA
    GCTATGCGCA CCCTGGATGT TATCTGTTGG GATCTGAGAA GGCTGGTGTT
    GGGGTAAGAA ACGATGCAGC ACGAAGCGAT ATTTTGGTCG ATTCGAGCAC
    AAGGTATAAG ATCATCTCTG CGGGAAATCT GGGAGATGCC GTTATCGAAC
    CATGCTGGCT GCAGTACATG AGAGAATGGG GCCCGACCGT GGAATACAAC
    TCACGGTCGG AGATAGACGC TGTGCTTAGC TTCTTGCCCT TCTTTCTTCG
    GTTCACAGCT GAAGCAATAC TGAACAGTCT TCCGGTGGAG CTGTACGAGG
    AGGAAGGACC AACTGGACCA AAGGAGAAAA ACAACTGGGA AGGCGATGAG
    AGAGGCTAGA AGATGTTTCC AACTTCAAAT ATATGCTTCA TAATTTGTTC
    CAGAATCCAG ATAGCTCTAT AGATATGTAC CCTAAGGGTG CTGTAATAGT
    GATATTGGGA TCGAACGATC GATATGCTTT GCCAAGGCAT TTCAGTTCAT
    AGAGTTTGTA GGTGAAATGC TGGCAAAGCT GAAGGTTGAA GAGGTAATCA
    CGTTATGTTG TCCTGTTTGA TCATCTGGCC TGTTTGTACC TTGTGTCAGC
    TATAACTCTG TTTCTAAGAA CCATAAACTA AAGCCGACAT AGTCGACAAA
    AGCTACTGAC CATGTGAGCC TCTCTTTCCT

    Gene models with high sequence identity

    1. AT3G04350.1 [+] show detail - Plant protein of unknown function (DUF946)
      E-value: 0; Score: 640.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PRE-MRNA PROCESSING-RELATED 3e-280
    HMMPanther PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 3e-280
    HMMPfam Protein of unknown function DUF946 1.4e-253

    See the detailed result >

    AT3G04350.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF946)
    Computational Description
    Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR