K17026

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17026

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17026

Determination of introduced cDNA(s)

  • J013000H11 - Rice Full-length cDNAs - Original: J013000H11

    full reading [+] show sequence

    Nucleotide sequence: J013000H11 - full reading
    GTCCTCTCGG TCGCCGCCAC AGCAGCCCCG ATCCACGCCG CTGCCGCCAG 
    ACGCGCCCTT CTCCTCCCTC GCACGCCGCA CGCCTCACCC TCACCGCCAC
    CCCGCCGCCG CCGATCTACA CACTCGCCGC CCCCGCCTCC GCTCCCACAC
    GCCCTTCTCG CCCCTCGCGC ACCGATCTCC GCTGTAGTTC TCCGCGCCGC
    CCCCGCTCTC CACCGCCCGA ACACAGTCGC TCGCCTCGCC GGTCTCCACT
    CCGCCTCGTC ATCCACTTCC ACTCGCCCAC CGCCGAAAGG TCAGCGTCAC
    TGGAATTTAG GCTTTCAATA AAGATCTCCT AAGGCATATC AAGGCTCACG
    GGCAAGGGAT CTCCCTCACA GATTCTTCAA GGAGGAGGGA CTGCATACTC
    AGTATTGCCG TAGCGTGGTG CCGCCGCCCA TCCTTGAGTA TCCACCGTCA
    CCGACTACCC TTCTCTGAGC GGGTGCAAAT CCTGCCAATT GACCCCATCT
    CAGAACGTAG AGCCATGCGG TTCCGTGTAG TATTCCTGTA GTCCACTCCT
    GCAATCCACC CGCCCTCTGT TTTGTCAAAC TTCTCATCTC CCCTTCCCTT
    CCGCCGCCAT GCTGCCGGCC GGTAGCCTCA CCGACAAGCA GCTCCACTTC
    TTCGACGCCA ATGGGTACCT TGTGCTGGGG TCGTTCTCGA GCGCGGAGGA
    GGTGAAGGCA ATGAGGGACC GCATGGCGGT GCTCATCGAC GGCTTTGACG
    GCGCTGGCGA CGTCTTCTCC ACAAAGGATC ATCGGCAGGT GAAGAATGAT
    TTTTTCTTCA AGAGTGCGGA GAATATCTCT TTCTTCTTTG AGGAAAAGGC
    ATTTGGAGAT GATGGATGCT TGAAACAGGC AAAGGAACTT TCAATTAATA
    AAGTTGGGCA CGCGTTACAT GAACTTGACC CTGTGTTCAA AAAGTTCTCT
    TTTGGAGAGA ATGTTTCCAG CCTATTCTCT TCTTTACGCT ACAAAAGACC
    TGCAGTTATT CAATCTATGT ACATCTTTAA GCAACCAGGC ATTGGTGGCG
    AGGTGGTGCC ACACCAGGAT AATACATTCC TATATACAAA CCCTCCATCA
    TGCACAGGGT TGTGGCTTGC ACTCGAAGAT GCGACAAAAA CGAATGGTTG
    CCTATGGGCA ATTCCTGGAT CACATAAAAA TGGTCTGAAA AGGCGAATGA
    TCAGAGATGA AAATGATACT CATTTTGATC ATCCTTCGCC AACCTATGAT
    CTGAAAGAAT TTGTGCCATT AGAAGTAAAG TCAGGTGATT TGGTGGTTAT
    TCATGGAGAT CTTGTACACC AGAGCTTTGA AAATCTTTCT CTGGTGTCAA
    GACATGCACT GAGCTTACAT GTAATTGATA CCGAAGGATG TGAATGGTCC
    AAACAAAACT GGTTACAAAG GAAAATCCCA CCTCAGCCAC TTTATGAAAA
    TTAGTACAAG CAGTTACCTA TGTGTCAAAT AAACGAGTGA TGACCTAGAA
    GCAATGGTCA GACAATGTAA ATACCTTGCT ACTCTGTTTT CATGGATGTT
    TTTTATGGCA ATAAATTTGG TGTACGATGT TGAGTAGC

    Gene models with high sequence identity

    1. AT2G01490.1 [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
      E-value: 6e-107; Score: 385.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phytanoyl-CoA dioxygenase 4.3e-66
    HMMPanther PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 1.4e-119

    See the detailed result >

    AT2G01490.1

    Model type
    Protein coding
    Short Description
    phytanoyl-CoA dioxygenase (PhyH) family protein
    Computational Description
    phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR