K17026

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17026

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17026

Determination of introduced cDNA(s)

  • J013000H11 - Rice Full-length cDNAs - Original: J013000H11

    full reading [+] show sequence

    Nucleotide sequence: J013000H11 - full reading 
    GTCCTCTCGG TCGCCGCCAC AGCAGCCCCG ATCCACGCCG CTGCCGCCAG 
    ACGCGCCCTT CTCCTCCCTC GCACGCCGCA CGCCTCACCC TCACCGCCAC 
    CCCGCCGCCG CCGATCTACA CACTCGCCGC CCCCGCCTCC GCTCCCACAC 
    GCCCTTCTCG CCCCTCGCGC ACCGATCTCC GCTGTAGTTC TCCGCGCCGC 
    CCCCGCTCTC CACCGCCCGA ACACAGTCGC TCGCCTCGCC GGTCTCCACT 
    CCGCCTCGTC ATCCACTTCC ACTCGCCCAC CGCCGAAAGG TCAGCGTCAC 
    TGGAATTTAG GCTTTCAATA AAGATCTCCT AAGGCATATC AAGGCTCACG 
    GGCAAGGGAT CTCCCTCACA GATTCTTCAA GGAGGAGGGA CTGCATACTC 
    AGTATTGCCG TAGCGTGGTG CCGCCGCCCA TCCTTGAGTA TCCACCGTCA 
    CCGACTACCC TTCTCTGAGC GGGTGCAAAT CCTGCCAATT GACCCCATCT 
    CAGAACGTAG AGCCATGCGG TTCCGTGTAG TATTCCTGTA GTCCACTCCT 
    GCAATCCACC CGCCCTCTGT TTTGTCAAAC TTCTCATCTC CCCTTCCCTT 
    CCGCCGCCAT GCTGCCGGCC GGTAGCCTCA CCGACAAGCA GCTCCACTTC 
    TTCGACGCCA ATGGGTACCT TGTGCTGGGG TCGTTCTCGA GCGCGGAGGA 
    GGTGAAGGCA ATGAGGGACC GCATGGCGGT GCTCATCGAC GGCTTTGACG 
    GCGCTGGCGA CGTCTTCTCC ACAAAGGATC ATCGGCAGGT GAAGAATGAT 
    TTTTTCTTCA AGAGTGCGGA GAATATCTCT TTCTTCTTTG AGGAAAAGGC 
    ATTTGGAGAT GATGGATGCT TGAAACAGGC AAAGGAACTT TCAATTAATA 
    AAGTTGGGCA CGCGTTACAT GAACTTGACC CTGTGTTCAA AAAGTTCTCT 
    TTTGGAGAGA ATGTTTCCAG CCTATTCTCT TCTTTACGCT ACAAAAGACC 
    TGCAGTTATT CAATCTATGT ACATCTTTAA GCAACCAGGC ATTGGTGGCG 
    AGGTGGTGCC ACACCAGGAT AATACATTCC TATATACAAA CCCTCCATCA 
    TGCACAGGGT TGTGGCTTGC ACTCGAAGAT GCGACAAAAA CGAATGGTTG 
    CCTATGGGCA ATTCCTGGAT CACATAAAAA TGGTCTGAAA AGGCGAATGA 
    TCAGAGATGA AAATGATACT CATTTTGATC ATCCTTCGCC AACCTATGAT 
    CTGAAAGAAT TTGTGCCATT AGAAGTAAAG TCAGGTGATT TGGTGGTTAT 
    TCATGGAGAT CTTGTACACC AGAGCTTTGA AAATCTTTCT CTGGTGTCAA 
    GACATGCACT GAGCTTACAT GTAATTGATA CCGAAGGATG TGAATGGTCC 
    AAACAAAACT GGTTACAAAG GAAAATCCCA CCTCAGCCAC TTTATGAAAA 
    TTAGTACAAG CAGTTACCTA TGTGTCAAAT AAACGAGTGA TGACCTAGAA 
    GCAATGGTCA GACAATGTAA ATACCTTGCT ACTCTGTTTT CATGGATGTT 
    TTTTATGGCA ATAAATTTGG TGTACGATGT TGAGTAGC

    Gene models with high sequence identity

    1. AT2G01490.1 [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
      E-value: 6e-107; Score: 385.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phytanoyl-CoA dioxygenase 4.3e-66
    HMMPanther PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 1.4e-119

    See the detailed result >

    AT2G01490.1

    Model type
    Protein coding
    Short Description
    phytanoyl-CoA dioxygenase (PhyH) family protein
    Computational Description
    phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR