K17028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17028

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17028

Determination of introduced cDNA(s)

  • J033118J07 - Rice Full-length cDNAs - Original: J033118J07

    full reading [+] show sequence

    Nucleotide sequence: J033118J07 - full reading 
    GGGCGGCACA CTCCCACGTC ATCCCCTTCC TCTCCCCGGC GGCGACGTCC 
    GCGCGCTGCT CCCCCTACGG CGGCGGGGCA GGCGGGGTTC TTCACCCGCC 
    TGGGACGCCT CATCCAGGAG AAGGCCAAGA GCGACGTCGA GAAGCTCTTC 
    TCCGGCTTCT CCAAGACCCG CGAGAGCCTC TCCGTCGTCG ACGAGCTCCT 
    CACCTACTGG AACCTCGCCG ACACCGACCG CGTCCTCGAC GAGCTCGAGG 
    AGGCTCTGCT GGTGTCGGAT TTTGGCCCCA AGATTTCGTT CCGGATCGTG 
    GACACTCTAC GCGAGGAAAT CCGCGATGGC AAGCTCAAGT CTGGGGCTGA 
    GATAAAGGAA GCGCTGAAAA GGTGTATTCT TGAACTGCTG ACGAGCAAAG 
    GCGGCAATCC GGAGCTGCAG CTCGGTTTCA GAAAGCCGGC AGTTATCATG 
    ATTGTGGGAG TGAATGGAGG TGGAAAGACT ACCTCATTAG GAAAACTTGC 
    TTACAGATTC AAGAATGAAG GAGTGAAGGT ATTGATGGCA GCAGGTGATA 
    CCTTCAGAGC AGCAGCTCGT GACCAGCTAG AAGTTTGGGC AGAGAGAACA 
    GGTTCAGAGA TTGTTATCGA TAATGATAAG AAAGCAAAAC CTGCATCAGT 
    TCTCTCGCAG GCAGTGAAGC GCGGGAAGCG TGAAGGATTT GATCTTGTTC 
    TTTGCGACAC GTCAGGACGA CTTCATACAA ATTATGGTCT GATGGAAGAA 
    TTGGTTTCCT GCAAGAAAGT CATAGCTAAA GCCCTTCCGG GTGCTCCTAA 
    TGAGATCTTG CTGGTTCTGG ATGGCACGAC TGGCTTGAAT ATGCTACAAC 
    AAGCGAGGGA GTTCAATGAT GTTGTTGGAG TCACAGGATT CGTCCTAACA 
    AAGCTTGATG GAACTGCTCG TGGTGGTTGT GTGGTTAGCG TTGTAGATGA 
    ACTTGGAATT CCAGTAAAGT TTATTGGTGT TGGTGAAGGG ATGGAGGATC 
    TTCAGCCTTT TGATGCTGAG GCATTTGTTG AAGCCATTTT TCCTTGAGCT 
    AGGACGCTTT GTTTTTTGAG ATGGAGAATT TGAAGTTTCG GAGAGAGCAT 
    GTTTGCTTAC TTGTACATCA TTCTGGTTTT TCACTCCTGT GACAATTTCA 
    CTATGTGTCC ATCCTTTCAT GTAATATATA TTTGCTAACA TGCTAGGAAA 
    TTAGAAGCAA AATTTTGGAC C

    Gene models with high sequence identity

    1. AT2G45770.1 [+] show detail - signal recognition particle receptor protein, chloroplast (FTSY)
      E-value: 2e-145; Score: 512.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Signal recognition particle, SRP54 subunit, GTPase 2.2e-73
    HMMPfam Signal recognition particle, SRP54 subunit, helical bundle 0.000000000015
    PatternScan Signal recognition particle, SRP54 subunit, GTPase 0
    HMMSmart ATPase, AAA+ type, core 0.00019
    Gene3D Signal recognition particle, SRP54 subunit, helical bundle 0.0000000097
    Gene3D no description 3.4e-61
    HMMTigr Cell division transporter substrate-binding protein FtsY 1.7e-119
    HMMPanther CELL DIVISION PROTEIN FTSY 2.8e-128
    HMMPanther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITIO 2.8e-128
    superfamily P-loop containing nucleoside triphosphate hyd 1.2e-68
    superfamily Signal recognition particle, SRP54 subunit, helical bundle 0.000000000000045

    See the detailed result >

    AT2G45770.1

    Model type
    Protein coding
    Short Description
    signal recognition particle receptor protein, chloroplast (FTSY)
    Curator Summary
    chloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP integration into isolated thylakoids.
    Computational Description
    CPFTSY; FUNCTIONS IN: nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, protein targeting, thylakoid membrane organization, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast, signal recognition particle, endoplasmic reticulum targeting, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897), Cell division transporter substrate-binding protein FtsY (InterPro:IPR004390); BEST Arabidopsis thaliana protein match is: chloroplast signal recognition particle 54 kDa subunit (TAIR:AT5G03940.1); Has 16847 Blast hits to 16846 proteins in 2926 species: Archae - 468; Bacteria - 10588; Metazoa - 346; Fungi - 290; Plants - 258; Viruses - 1; Other Eukaryotes - 4896 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR