K17116

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17116

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17116

Determination of introduced cDNA(s)

  • J013116M10 - Rice Full-length cDNAs - Original: J013116M10

    full reading [+] show sequence

    Nucleotide sequence: J013116M10 - full reading 
    CTCCGTTCCC CCCTCCACTT TCCCCATCTC CGACACCTCT CTCCTCTCCG 
    ATTTACTCCT CTCCTTTTTG CCCTATCGCC TTGGCGATAG GGTTCCGCTT 
    CGCTGCTGCA GCAGCGGCGT TTCGCCTGTA AATGCTTCTT GTTGTTGTTG 
    GGGGGAGGGG TCTCTTTTAG GTGATTGTTC TTGTTCTTCT TCTTCGACAT 
    GGTGGCTTTC TATGGACTCG GAGATGGAGG GTGTCTCGTG TCGGCGCCGG 
    CGGAGCTGGC CGGGATGTTC TGCCGCGGCG GCGTGGTGGT GCAGCAGCAG 
    CAGAGGAAGC GGTCGCTGGT GGCCGCGTCG GCGGTCGCGG CGGCGGACTG 
    CGTCGCCCGC GGCAGCCCCA ACCTCTGCTC GCTCGCGCTG TGGGATGTCC 
    CGCTCGTCAC CGACGCCGGC CTCGCCGAGA TCGCCGCCGG TTGCCCCTCG 
    CTGGAGCGCC TGGACATCAC CCGTTGCCCG CTCATCACAG ACAAGGGCCT 
    CGCCGCCGTC GCGCACGGCT GCCCCAACCT GCTGTCTCTC ACTGTCGAGT 
    CGTGCTCCGG TGTCGGCAAC GATGGCCTCA GGGCAATTGG CCGATCTTGC 
    TCCAAGATTC AGGCATTGAA CATCAAGAAT TGCGCGCGGA TCGGCGACCA 
    GGGCATCTCC AGCCTCGTGT GCTCCGCGAC CGCCTCGCTG ACCAAGATCA 
    GGCTGCAGGG TTTGAACATC ACTGATGCTT CGCTCGCCTT GATCGGGTAC 
    TACGGGAAGG CTGTCACGGA TCTCACCCTT GTCCGCCTCC CGGTGGTCGC 
    GGAGAGAGGG TTTTGGGTGA TGGCCAATGC TGCCGGCCTG CAGAATCTGA 
    GGTGCATGAG TGTCACCTCT TGCCCTGGGG TCACCAATCT CGCGCTTGCT 
    GCTATCGCCA AGTTCTGCCC GAGCTTGAGG CAGCTTTCCT TCAGGAAGTG 
    TGGACACATG ACGGATGCCG GTCTCAAGGC TTTCACGGAA TCGGCGAGGT 
    TGTTGGAGAG CTTGCAGCTT GAAGAGTGCA ATGGGGTTAC TCTTGTTGGT 
    ATTCTTGATT TCCTCGTCAA CTGCGGTCCG AAGTTCAGGT CCCTCTCTTT 
    GGTGAAGTGC ATGGGTATCA AGGACATCTG CTCTACGCCT GCGCAGCTTC 
    CTCTGTGCAA ATCGCTTCAA TTCCTGACCA TCAAGGACTG CCCGGATTTC 
    ACTGATGCAA GCTTGGCTGT GGTGGGGATG GTTTGCCCTT ACTTGGAGCA 
    GGTTGATTTG AGTGGTCTCC GTGAGGTCAC TGACCGTGGG CTTCTTCCAC 
    TGATCAACTC TTCCGAGGGT GGTCTAGTCA AGGTCGATTT GAGTGGTTGC 
    AAGAACATCA CAGATGCAGC TGTTTCTACC CTGGTGAAGG GGCATGGAAA 
    ATCTCTGAAG CAAGTTAGTC TTGAGGGCTG CAGCAAGATA ACCGATGCTA 
    GCCTCTTTGC CATCTCCGAG AATTGCACTG AGCTTGCTGA GCTCGATCTG 
    TCCAAGTGCA TGGTCAGTGA CAATGGTGTT GCTACCCTGG CATCAGCAAA 
    GCACCTCAAG CTTCGTGTCC TGTCACTGTC TGGTTGCTCG AAGGTTACTC 
    CGAAGAGCGT GTCATTCTTG GGCAACATGG GGCAGTCTTT GGAGGGTCTC 
    AATCTTCAGT TCTGCAACAT GATTGGTAAC CACAACATTG CATCGCTGGA 
    GAAGCAGCTC TGGTGGTGCG ACATTCTCGC ATAGGCAGAC AAGATGGTTC 
    ATTGCTGGAG GGTGTCACCT GTGCTTGGGT GAGGCACCTC CAGATGCAGA 
    TATACATCCT TAGAGGTAGC GCAACCAGTC AATTGCTGTG CTAGTCATGT 
    TTTTGGCTAG TGCATGAGTC ATGGTGGGTT CTGGATTTGT TCGAGGACCG 
    GTTGTTTCCG AGGGGTGCTT TCCGCCAAGT GCTCGTTTTT TCACAGACTG 
    CCTCAAGAGG CAATCTGTTT TTTGAGCCTT CGGCTGCCAT TGCTGGCATT 
    CTGCCCCCTC TACCCAGACA TTGGTCCTTG CCGCTATAGT CACAACACCA 
    TGATTGTTTT TTAGGTTGCC GTAGTGTCCC TTGTCCTTTT TTCTTTACTG 
    CTTGCTTCCT AGTCATGAAG TTGCAGGCAC CGGCATCGGC ACAGGGGGGC 
    TGTCATGGAG TTCCGCAGCT CAACTGCCGG TGTCACCAGT AGTCGGCAGC 
    GCCGGTGTTC CAGGCTGCCG ACGACGCTGG AGTGCCTGCA GACTTACCCT 
    GTGTGTATGG TTACTGAGTC TGTTGGTGTC TTGAGGTCAT GTGTGATGAT 
    GTTTTCGGTA GTGTGTAAGG GTCATAGAGG GTTGATTTTT TGTTACAGGT 
    ACTCTTGGGA ATGCCTGGTG TTGGGGGATC TGGCCATTGC AAGGCGCATA 
    CTAGAGCCTT GTCATGACAG CCTTGTATGG TTGTTTTTTC ACCAGATCCC 
    TGTTTTTACC GGCATATTGT TGAGGACTGT AATCTTTGCA ACCTTCTCAG 
    AATAAATTAA GTATGTGTTT ATGTG

    Gene models with high sequence identity

    1. AT2G25490.1 [+] show detail - EIN3-binding F box protein 1
      E-value: 3e-128; Score: 456.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 6.3
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 6.2e-07
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 0.085
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 0.16
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 16
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 0.0051
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 85
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 47
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 0.16
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 0.018
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 0.0089
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 0.078
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 57
    HMMPanther GRR1, PLANT 1.6e-136
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 1.6e-136
    Gene3D no description 3.4e-21
    Gene3D no description 8.3e-19
    Gene3D no description 2.5e-35
    superfamily RNI-like 5.9e-32
    superfamily RNI-like 6.9e-29

    See the detailed result >

    AT2G25490.1

    Model type
    Protein coding
    Short Description
    EIN3-binding F box protein 1
    Curator Summary
    Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3.
    Computational Description
    EIN3-binding F box protein 1 (EBF1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 13069 Blast hits to 4728 proteins in 296 species: Archae - 0; Bacteria - 528; Metazoa - 5097; Fungi - 1628; Plants - 4199; Viruses - 9; Other Eukaryotes - 1608 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR