K17121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17121

Determination of introduced cDNA(s)

J013142O06 - Rice Full-length cDNAs - Original: J013142O06

full reading [+] show sequence

GCTTTGAAGC TTATCCAACC AATCAAGGAC AAATACCCGG GTATAACTTA 
TGCTGATTTG TTCCAGTTGG CAAGTGCTAC AGCAATTGAG GAAGCTGGTG 
GGCCGAAAAT TCCAATGAAA TATGGACGAG TTGATGTCAC AGCAGCTGAG 
CAGTGCCCAC CAGAGGGGAG GCTTCCTGAT GCCGGTCCAC GTGTGCCCGC 
TGATCATCTT AGGGAGGTAT TCTACAGGAT GGGCCTTGAT GACAAGGAAA 
TTGTTGCATT ATCTGGAGCA CACACACTTG GAAGATCAAG ACCTGACAGG 
AGTGGCTGGG GAAAGCCAGA AACAAAATAT ACTAAGGATG GGCCTGGTGA 
ACCTGGAGGG CAATCATGGA CAGTTGAATG GTTGAAGTTT GATAACAGTT 
ACTTCAAGGA CATAAAAGAG CAAAGGGACC AGGATCTTCT AGTGCTACCC 
ACAGATGCTG CATTATTTGA GGATCCGTCC TTCAAGGTAT ATGCCGAAAA 
ATATGCAGAG GATCAGGAGG CATTCTTTAA AGACTACGCT GAAGCTCATG 
CTAAACTGAG CGACCTTGGT GCAAAGTTCG ATCCACCTGA GGGATTTTCA 
CTGGACGATG AACCAGCCGT CGAAGAGAAG GATCCTGAAC CAGCACCAGC 
GCCAGCAGCA GCACCACCAC CTCCACCAGT CGAGGAGAAG AAGGAAGCTG 
AACCAACTCC AGTACCAGTA ACGGTAGGAG CAGCAGTGGC ATCATCGCCA 
GCGGATGACA ACAACGGTGC AGCACCGCAA CCAGAGCCCT TCGTCGCTGC 
GAAATACTCC TACGGAAAGA AGGAGCTGTC GGACTCGATG AAGCAGAAGA 
TCAGGGCGGA GTACGAGGGA TTCGGAGGCA GCCCGGACAA GCCTCTGCAG 
TCCAACTACT TCCTCAACAT CATGCTCTTG ATCGGAGGGC TGGCCTTCTT 
GACGTCTCTG CTCGGGAGCT GAGAGCGATG GTCTGATGAC CTCCTCTGAC 
GAGTGTTTTG AGTTGTTCTG CCTGTGCTAA GATTTGCGTG TTTCTCTTTC 
CATGTTTTGA GTCGTTATTC CGTAAATAAA TTGAGGTAAA AGGATGGGCA 
TGTGAATGGA TTCCAGTACT TTCTGAACTT CTTGAGTAAT TCCTCTAGAG 
AAATATTTGT CGGAGAGAAA TGTCACATTA TCTAGTTGTC ATGGCTCATG 
ACTACATTCT CTATACTGAG GGAAATTATG ACATTCTCTA AACTAAGGAG 
GGAAATAATG AGGACACCCC

Gene models with high sequence identity

AT1G77490.1 [+] show detail - thylakoidal ascorbate peroxidase
E-value: 8e-103; Score: 370.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Haem peroxidase, plant/fungal/bacterial	17.979
PatternScan	Peroxidases heam-ligand binding site	0
superfamily	Haem peroxidase	1.9e-57
HMMPfam	Haem peroxidase, plant/fungal/bacterial	1.2e-32
Gene3D	no description	2.8e-12
Gene3D	no description	6e-32
FPrintScan	Haem peroxidase, plant/fungal/bacterial	2.4e-17
FPrintScan	Haem peroxidase, plant/fungal/bacterial	2.4e-17
FPrintScan	Haem peroxidase, plant/fungal/bacterial	2.4e-17
FPrintScan	Haem peroxidase, plant/fungal/bacterial	2.4e-17
FPrintScan	Plant ascorbate peroxidase	8.7e-08
FPrintScan	Plant ascorbate peroxidase	8.7e-08
FPrintScan	Plant ascorbate peroxidase	8.7e-08

See the detailed result >

AT1G77490.1

Model type: Protein coding
Short Description: thylakoidal ascorbate peroxidase
Curator Summary: Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description: thylakoidal ascorbate peroxidase (TAPX); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: stromal ascorbate peroxidase (TAIR:AT4G08390.2); Has 7809 Blast hits to 7730 proteins in 1256 species: Archae - 55; Bacteria - 2313; Metazoa - 5; Fungi - 620; Plants - 3345; Viruses - 0; Other Eukaryotes - 1471 (source: NCBI BLink).
Link: InterPro Scan - TAIR