K17121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17121

Determination of introduced cDNA(s)

  • J013142O06 - Rice Full-length cDNAs - Original: J013142O06

    full reading [+] show sequence

    Nucleotide sequence: J013142O06 - full reading
    GCTTTGAAGC TTATCCAACC AATCAAGGAC AAATACCCGG GTATAACTTA 
    TGCTGATTTG TTCCAGTTGG CAAGTGCTAC AGCAATTGAG GAAGCTGGTG
    GGCCGAAAAT TCCAATGAAA TATGGACGAG TTGATGTCAC AGCAGCTGAG
    CAGTGCCCAC CAGAGGGGAG GCTTCCTGAT GCCGGTCCAC GTGTGCCCGC
    TGATCATCTT AGGGAGGTAT TCTACAGGAT GGGCCTTGAT GACAAGGAAA
    TTGTTGCATT ATCTGGAGCA CACACACTTG GAAGATCAAG ACCTGACAGG
    AGTGGCTGGG GAAAGCCAGA AACAAAATAT ACTAAGGATG GGCCTGGTGA
    ACCTGGAGGG CAATCATGGA CAGTTGAATG GTTGAAGTTT GATAACAGTT
    ACTTCAAGGA CATAAAAGAG CAAAGGGACC AGGATCTTCT AGTGCTACCC
    ACAGATGCTG CATTATTTGA GGATCCGTCC TTCAAGGTAT ATGCCGAAAA
    ATATGCAGAG GATCAGGAGG CATTCTTTAA AGACTACGCT GAAGCTCATG
    CTAAACTGAG CGACCTTGGT GCAAAGTTCG ATCCACCTGA GGGATTTTCA
    CTGGACGATG AACCAGCCGT CGAAGAGAAG GATCCTGAAC CAGCACCAGC
    GCCAGCAGCA GCACCACCAC CTCCACCAGT CGAGGAGAAG AAGGAAGCTG
    AACCAACTCC AGTACCAGTA ACGGTAGGAG CAGCAGTGGC ATCATCGCCA
    GCGGATGACA ACAACGGTGC AGCACCGCAA CCAGAGCCCT TCGTCGCTGC
    GAAATACTCC TACGGAAAGA AGGAGCTGTC GGACTCGATG AAGCAGAAGA
    TCAGGGCGGA GTACGAGGGA TTCGGAGGCA GCCCGGACAA GCCTCTGCAG
    TCCAACTACT TCCTCAACAT CATGCTCTTG ATCGGAGGGC TGGCCTTCTT
    GACGTCTCTG CTCGGGAGCT GAGAGCGATG GTCTGATGAC CTCCTCTGAC
    GAGTGTTTTG AGTTGTTCTG CCTGTGCTAA GATTTGCGTG TTTCTCTTTC
    CATGTTTTGA GTCGTTATTC CGTAAATAAA TTGAGGTAAA AGGATGGGCA
    TGTGAATGGA TTCCAGTACT TTCTGAACTT CTTGAGTAAT TCCTCTAGAG
    AAATATTTGT CGGAGAGAAA TGTCACATTA TCTAGTTGTC ATGGCTCATG
    ACTACATTCT CTATACTGAG GGAAATTATG ACATTCTCTA AACTAAGGAG
    GGAAATAATG AGGACACCCC

    Gene models with high sequence identity

    1. AT1G77490.1 [+] show detail - thylakoidal ascorbate peroxidase
      E-value: 8e-103; Score: 370.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Haem peroxidase, plant/fungal/bacterial 17.979
    PatternScan Peroxidases heam-ligand binding site 0
    superfamily Haem peroxidase 1.9e-57
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1.2e-32
    Gene3D no description 0.0000000000028
    Gene3D no description 6e-32
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-17
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-17
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-17
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-17
    FPrintScan Plant ascorbate peroxidase 0.000000087
    FPrintScan Plant ascorbate peroxidase 0.000000087
    FPrintScan Plant ascorbate peroxidase 0.000000087

    See the detailed result >

    AT1G77490.1

    Model type
    Protein coding
    Short Description
    thylakoidal ascorbate peroxidase
    Curator Summary
    Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
    Computational Description
    thylakoidal ascorbate peroxidase (TAPX); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: stromal ascorbate peroxidase (TAIR:AT4G08390.2); Has 7809 Blast hits to 7730 proteins in 1256 species: Archae - 55; Bacteria - 2313; Metazoa - 5; Fungi - 620; Plants - 3345; Viruses - 0; Other Eukaryotes - 1471 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR