K17135

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17135

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17135

Determination of introduced cDNA(s)

  • J023105O06 - Rice Full-length cDNAs - Original: J023105O06

    full reading [+] show sequence

    Nucleotide sequence: J023105O06 - full reading 
    GAAGTATGCA TCCAAGTTGC TATAAAGGTT AGGCAGGCAG GCCCCCGCTC 
    ACCAGGAGAA TTAGCTAGGG AGCTAGGTGA GCACGAGAGC AGCAATGGCG 
    GCGACGGCGA GCAACAAGAG GGTGATCCTG AAGCGGTACG TGACGGGGCT 
    CCTGTCGGAG GATGACATGG AGGTGGTGAC GACGGAAGTG CCACCGTTGG 
    CCGTCGTCCC AGCAGGGTCG GAGGCGGTGG TGGTGAAGAA CCTGTATGTC 
    TCCTGCGATC CTTACATGCG CAACCGGATG ACCCGTCATG AGGTGCCTAG 
    CTATGTCTCA GACTTTATCC CGGGAGAGGT TTTGGCAAAT TTTGGCGTGA 
    TGAGGGTGAT ATCATCCGGC CACCCAGATT TCAAGGCAGG TGATCTTGTT 
    TGGGGAATAA CCGGATGGGA AGAATACACC GTGATTAACA ATCCGGAATC 
    ACTTTTCAGG ATCAATCACC CTAAACTTCC TCTGTCCTAC TACACTGGTA 
    TTTTAGGAAT GCCAGGGCTT ACAGCCTATG CTGGATTCTT TGAAGTGTCT 
    AAGCCGAAGA AAGGTGAATA TGTCTTTATT TCAGCAGCAT CTGGTGCCGT 
    AGGTCAGATT GTTGGGCAGC TTGCTAAGAT CATAGGCTGC TATGTGGTTG 
    GCAGTGCTGG TTCTGACGAA AAGGTCAGCT TATTGAAGAC CAAGTTTGGC 
    TTTAATGACG CTTTCAACTA TAAGAAGGAG CCAGACCTCG AGGCAGCCCT 
    AAGGAGGTAT TTTCCAGAGG GTATCGACAT CTACTTTGAG AATGTGGGCG 
    GTGAGACGCT AGATGCAGTG CTACCTAACA TGCGCCTAGG TGGTCGGATC 
    GCGGCATGTG GGATGATCTC GCAGTACAAC CTAGAGCGGC CAGAGGGGGT 
    GAAAAACTTG TTCTATATCG TCACCAAGCG TCTGCGTATG GAGGGGTTCC 
    TTGTGTTTGA CTTCTATGAC AGGTACTACC AGTTCGAGGA TGAAATGGCT 
    AGGTACCTAA AGGAAGGGAA GGTGGCATAC GTGGAGGACG TCGTTGAGGG 
    GCTTGATGCG GCACCGGCAG CACTCATTAA GCTCTTCACC GGCCGCAATG 
    TCGGAAAACA GCTCGTCGCC ATCGCACGAG AGTGATACGG TGCCACACTG 
    CTCGGCACGC AAATTAGCAT TACCGAGGAG TACTACTGTA GTTGTTCAGA 
    TTTCAGAAAT GGGGGCATCC CGTTTGTCTT GTGGGGTTCA GAAAATAGAA 
    ATAAAGAATA GATATGTTCG

    Gene models with high sequence identity

    1. AT3G03080.1 [+] show detail - Zinc-binding dehydrogenase family protein
      E-value: 6e-123; Score: 437.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 2.3e-52
    superfamily GroES-like 4.3e-32
    superfamily GroES-like 5.2e-06
    HMMPfam Alcohol dehydrogenase, zinc-binding 1.1e-21
    HMMPanther ALCOHOL DEHYDROGENASE 2e-145
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 2e-145
    Gene3D NAD(P)-binding domain 6.6e-47
    HMMSmart Polyketide synthase, enoylreductase 3.6e-05

    See the detailed result >

    AT3G03080.1

    Model type
    Protein coding
    Short Description
    Zinc-binding dehydrogenase family protein
    Computational Description
    Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1); Has 15825 Blast hits to 15807 proteins in 1776 species: Archae - 145; Bacteria - 8757; Metazoa - 820; Fungi - 1154; Plants - 597; Viruses - 0; Other Eukaryotes - 4352 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR