K17141

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17141

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17141

Determination of introduced cDNA(s)

  • J023062F07 - Rice Full-length cDNAs - Original: J023062F07

    full reading [+] show sequence

    Nucleotide sequence: J023062F07 - full reading 
    GATCAAAGCG AGACACCTTT TCTTTTGGCC TCCTTCCTCG CGAAAACCAC 
    CAAACCAAAA CCCACACACC CACAGCTTTT CTCCCCCTCA CTGCTTTGCT 
    CTCCAGTCTC CACCTCCTCC TCCTCGCTGC CGCGCCGCCC ATCCGCCAGC 
    CATGGCGATG TCGTCGTCCC GCTCGGCGGC CGCGATCCGG GGGCGGCGGG 
    TCGGGGCGCT GGCGAGGGCG AGGAGGCACG CGACGAGGGC GATGGCGTCG 
    CTGTTCGGCC ACGTCGAGCC GGCTTCCAAG GACCCCATCC TCGGCGTCAC 
    CGAGGCCTTC CTCGCCGACC CCTCCCCCGA CAAAGTCAAC GTCGGCGTCG 
    GCGCCTACCG GGACGACAAC GGCAAGCCCG TCGTGCTCGA GTGCGTGCGC 
    GAGGCCGAGC GCCGGATCGC CGGCAACCTC AACATGGAGT ACCTTCCAAT 
    GGGAGGAAGT ATAAAGATGA TTGAAGAGTC ACTAAAGCTG GCATATGGTG 
    AGGATTCTGA TTTCATCAAA GATAAGAGGA TTGCTGCGGT GCAGGCTCTT 
    TCAGGCACAG GTGCATGCCG GCTCTTTGCC GATTTCCAGA GGCGTTTCTT 
    GCCAAATTCA CAGATCTACA TACCTACACC TACATGGTCC AATCATCATA 
    ACATTTGGAG GGATGCTCAA GTACCTCAAA GGACATTCAC CTATTACCAT 
    CCAGAGTCAA GAGGGCTTGA TTTCGCAGGA CTGATGGATG ATATTAAGAA 
    CGCTCCAAAT GGTTCATTCT TTTTGCTTCA TGCTTGTGCC CATAATCCTA 
    CTGGAGTTGA TCCTACAGAA GAACAATGGA GAGAGATATC CTACCAATTC 
    AAGATAAAGA ATCATTTCCC ATTCTTTGAC ATGGCATACC AAGGATTTGC 
    CAGCGGTGAT CCAGAGAGAG ATGCTAAGGC AATCCGAATC TTCCTTGAAG 
    ATGGGCATCA AATTGGATGT GCTCAGTCAT ATGCAAAGAA CATGGGACTG 
    TATGGGCAAA GGGCAGGGTG CTTGAGTATT CTGTGTGAGG ATGAGATGCA 
    AGCAGTTTCT GTTAAGAGCC AATTGCAACA GATTGCAAGG CCAATGTACA 
    GCAACCCACC TGTTCATGGT GCACTGGTTG TCTCCATAAT CCTTAATGAT 
    CCAGAATTAA AGAGTTTATG GTTGAAAGAG GTCAAGGGTA TGGCTGATCG 
    AATCATTGGA ATGCGGAAGG CACTCCGGGA AAATCTCGAA GGCCTAGGTT 
    CACCATTGTC ATGGGATCAC ATCACCAATC AGATTGGAAT GTTCTGCTAC 
    AGTGGGATGA CACCTGAACA GGTGGATCGC TTAACCAATG AATACCATAT 
    TTACATGACC CGTAATGGCA GAATAAGCAT GGCTGGTGTA ACAACAGGAA 
    ATGTGGCGTA TTTGGCTAAT GCTATTCATG AGGTCACTAA AACGAAATGA 
    AGCTACTTCC TCTTCCCTCT TCGGCCAATG AAATGAGGCT TGCAAGCGGC 
    GGCGTTTTTT TTTTGGGGGG TGGTCTATTG ACCTTTAAGA TGGTTGTACT 
    AGAGAAATAA TCCAGTGAAC ATGCTGGTGT TTCTCCAACT TCGGATTTTC 
    CCTGTATGGA GGAGAGAACT AGAAACCTAC CCAATTTTGA GAGCTATAGA 
    TGCCGATCCT GTTATTTCAA TCGTCAGATG TTATGCCTGT GGCAGCCTGG 
    CAGGTCACCT CAGAAACAGA GATATGTGAA AGAGAATAAA TGCAAATGAG 
    CTGAGCATTT TGACG

    Gene models with high sequence identity

    1. AT2G30970.2 [+] show detail - aspartate aminotransferase 1
      E-value: 0; Score: 697.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 1.2e-100
    FPrintScan Aspartate/tyrosine aminotransferase 3.7e-36
    FPrintScan Aspartate/tyrosine aminotransferase 3.7e-36
    FPrintScan Aspartate/tyrosine aminotransferase 3.7e-36
    FPrintScan Aspartate/tyrosine aminotransferase 3.7e-36
    superfamily Pyridoxal phosphate-dependent transferase, major domain 8.3e-112
    PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
    HMMPanther Aspartate/other aminotransferase 3.7e-241
    HMMPfam Aminotransferase, class I/II 2e-87

    See the detailed result >

    AT2G30970.2

    Model type
    Protein coding
    Short Description
    aspartate aminotransferase 1
    Curator Summary
    ASPARTATE AMINOTRANSFERASE 1
    Computational Description
    aspartate aminotransferase 1 (ASP1); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, copper ion binding; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 2 (TAIR:AT5G19550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR