K17143

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17143

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17143

Determination of introduced cDNA(s)

J013042L10 - Rice Full-length cDNAs - Original: J013042L10

full reading [+] show sequence

GGCGAGAAAA ATCCCCAGCG GGAGAGCTCA CGAACTGTTC CCTTCCCATG 
GCGGCGCTGC CTCTCCTCCG GTGGGGCGCT TCCTCCCTCC GAGGAGGCCA 
CTCCTCCGCT CCGCCTTCGA GCCGCCTCTT CTCCGCGCTC CGCCGACCTC 
CCGCCGCCGC CCGCTGCGAG ACCGGCTCGA GGGTCATGCT CAAGGGGATG 
GACTACCCTG AGCTCGAGAA TTGGGTGCGG TCGCAGGGCT TCCGGCCAGG 
GCAGGCCATG ATGCTGTGGA AATGCCTCTA CGGGAACAAC GTATGGGCGC 
ATTGCTATGA CGAGCTGGCT GGTTTAAACA AGGACTTCAG GAAAATGCTA 
ACAGATCATG CTGATCTTAA GGCATTAACT GTGAAAGACA TTCTTAACGC 
GTCAGATGGG ACCCGAAAGA TACTGTTCTC TCTTGAAGAT GGATCAGTGA 
TTGAAACAGT TTGTCATTCC TTGCACTAGT GGCAGGACAA CTGTCTGTGT 
TTCAAGTCAA GTGGGTTGTG CCATGAATTG TCAGTTTTGC TTCACTGGAA 
GGATGGGCTT GAGAAAGCAT TTGTCTACAG CTGAGATTGT TGAGCAGGCT 
GTGTTTGCTC GTAGACTGTT TTCAGATGAA TTTGGATCCA TCACAAATGT 
TGTATTTATG GGCATGGGTG AGCCGTTGCA CAACATTGAC AATGTACTAA 
AAGCCTCAGC TATTATGGTT GATGAGCAGG GCCTTCAGTT TAGTCCTCGC 
AAGGTCACTG TCTCCACAAG CGGTCTTGTC CCACAGATAA AACGCTTCCT 
ACAGGAATCC AATTGTGCGC TGGCTGTGAG TCTTAATGCA ACAACTGATG 
AGGTGAGAAA CTGGATAATG CCTATTAATA GAAAATACAA TCTCAGCTTG 
CTTCTTGGTA CATTAAGGGA GGAAATTCGT TTGAAAAAGA AGTACAAAGT 
GTTTTTTGAA TACGTCATGC TTGCTGGAGT GAACGACAGT GTGGATGACG 
CGAAGAGACT AGTAGATTTA GTTCGCGGGA TCCCTTGCAA GATCAACCTC 
ATCTCTTTCA ATCCCCATAG CGGGTCACAA TTCAAGCCCA CTCCTGATGA 
GAAAATTATT GAGTTTCGTA ACATTTTAAT TCAAGATGGC CTTGTTGTAT 
TTGTTCGGCT CAGCAGAGGG GATGATCAGA TGGCTGCCTG TGGACAGCTA 
GGAGAGCCTG GGGACTACCA GCTACCCCTG CTCCGTGTAC CTGAGAAATT 
CCAGGTCGCT TTGTGACTCT AAACAGTAAG TACGGTACTA CAATCCTCAT 
AGATATTGTA GAATAGCTTT GACAAAAGAC ATGTAACTTT CATGCGGTTC 
TTAGAGGTCA TTCTCTGGGC CAACCTGACG ACTGACGGAA TATTTTTGTT 
ACTTTCTTTA AGGAAAATTT TTGTTGTTAC TACAACAAGA CAGTGTCTTC 
AGCTGGCTTA TGGCATGTAA AAGAACATTT AGGCATAGTG CCGCTAATCT 
GCTAAGTACC

Gene models with high sequence identity

AT1G60230.1 [+] show detail - Radical SAM superfamily protein
E-value: 1e-150; Score: 134.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Radical SAM	0.00000000047
superfamily	Radical SAM enzymes	6.2e-19

See the detailed result >

AT1G60230.1

Model type: Protein coding
Short Description: Radical SAM superfamily protein
Computational Description: Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 6934 Blast hits to 6928 proteins in 2336 species: Archae - 3; Bacteria - 5075; Metazoa - 1; Fungi - 1; Plants - 140; Viruses - 5; Other Eukaryotes - 1709 (source: NCBI BLink).
Link: InterPro Scan - TAIR