K17150

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17150

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
whole plant flowering stage (PO:0007016)
  • premature (PATO:0000694)
    (Adult plant::Flowering::early)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
whole plant flowering stage (PO:0007016)
  • premature (PATO:0000694)
    (Adult plant::Flowering::early)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17150

Determination of introduced cDNA(s)

  • J023121N24 - Rice Full-length cDNAs - Original: J023121N24

    full reading [+] show sequence

    Nucleotide sequence: J023121N24 - full reading
    GGTGGAGACT GGAGACGGGA GAGAGGAGTA GGTAGCAAAC CCTCCTCTTC 
    TTCTCTTCTC CTTCGTTGGG CGTGGGCGTC GCGAGAGGCG AGATGGCGGC
    GGCGACGTTG GCGGCGGCGA GCATGGGGGT GGTGACGGAG GTGCTGGGGA
    GCGACGTCGT CGACGAGGTC GACCAGCCCA TCATCGACTA CATCGCCAAC
    GTCCTCGCCG ACGAGGACTT CGACTTCGGC GCCCCCGACG GCCACGGCAT
    CTTCGACGCG CTCGGCGACC TCCTCATCGA CGCTCGGTGC GTCGCCGACG
    AGGAGCACTG CCTCGAGGTC TGCAGTAAGA TTTGTGAAAA ATTTGGAAAG
    CATGGCCTGG TAAAACCTAA ACAAGCTATG CGAAGCCTTG TCACTCCTTT
    ACGTATGAAC GAGGGAATGG ACGATAAGGT TGCCCCCAAA AAGCAAGCTG
    ATGTATTTGA TGGACCCTTG CTTTCATCAC GTGACAAAGC CAAGATTGAA
    CGGAAGAAGA GAAAGGATGA GAGACAAAGA GAGGCTCAAT ACCAAACGCA
    TGTTGCTGAA ATGGAGGCAC TTAGGGCTGG AATGCCTCCA GTATTTGTAA
    ATCACAATAA CTCTGGTGGG CCAGCTGTTA GGGATATCCA TATGGAGAAC
    TTCAGTGTTA CTGTCGTGGT CGTGATCTCA TTCAAGATTG CACTGTAACA
    CTTGCTTTTG GGAGGCACTA TGGTCTTGTT GGAAGAAATG GTACAGGGAA
    AACCTCTTTT CTCAGAGCTA TGGCGATGCA TGCGATTGAT GGGATTCCCA
    AGAACTGCCA GATATTGCAT GTTGAGCAAG AGGTTGTGGG CGATGACACA
    ACAGCTTTGC AGTGTGTTCT GAATGCTGAT ATTGAACGGG TTCAACTTTT
    GCAAGAAGAA GCTCATCTGG TTCAACGGCA GAAAGATCTA GAGTATGAGG
    CTGAGTTTGA GCAGAGCGCG TCCAAAAGCA AGGATGGTCT TGACAAAGAT
    GCTATCAGCA AGAGGCTTGA GGAGATATAC AAACGCCTTG AGTTTATTGA
    TGCTGATGCT GCAGAGGCTC GTGCAGCATC AATTCTGGCG GGTCTTAGTT
    TCACTCCTGA AATGCAACGT AAACGCACAA AACAGTTTTC TGGTGGATGG
    CGCATGAGAA TTGCTCTAGC ACGTGCTCTC TTCATTGAGC CTGATTTGTT
    GCTACTTGAT GAGCCAACAA ATCATCTTGA TCTCCATGCT GTGTTATGGT
    TAGAAACATA TCTCCTGAAA TGGCCAAAGA CATTCATTGT TGTATCACAT
    GCTAGGGAGT TTCTTAATAC GGTCGTCACC GACATTCTTC ATCTGCATGG
    ACAAAAGCTA CATGCTTACA AAGGTGATTA TGACACATTC GAGAGGACAA
    GGGAGGAGCA CCTTAAGAAC CAGCAGAAAG CTTTTGAAAC AAATGAGAAG
    GCCAGATCCC ACATGCAGGC ATTCATTGAC AAGTTCCGTT ACAATGCAAA
    GAGAGCATCA CTTGTTCAAT CAAGAATCAA GGCATTGGAG CGAATGGAGC
    ATGTTGATGC GGTCGTCAGT GATCCAGACT ATAAATTCGA ATTTCCAACA
    CCAGATGACC GCCCTGGACC ACCAATCATC AGCTTCAGTG ACGCATCTTT
    TGGTTATCCT GGAGGCCCCA CCTTATTTAA AAACTTGAAT TTTGGTATTG
    ACCTGGACAG CCGCATAGCA ATGGTTGGTC CAAATGGTAT TGGCAAATCC
    ACTATACTTA AACTAATATC TGGAGATCTT CAGCCAACTT CAGGGACAGT
    GTTCCGCTCT CCCAAGGTTC GCATGGCTGT ATTCAATCAA CACCATGTTG
    ATGGGCTTGA TTTAACAGTG AACCCCCTTT TGTACATGAT GAGATGCTAC
    CCTGGTGTAC CTGAACAGAA ACTGAGGGCA CACTTGGGTT CTTTCGGTGT
    TACAGGAAAT CTTGCCCTCC AACCAATGTA CACTTTATCA GGTGGTCAGA
    AAAGTAGGGT TGCCTTTGCA AAGATCACCT TCAAGAAGCC ACACATTATT
    CTTCTCGATG AGCCTTCTAA CCATCTTGAT CTGGATGCTG TGGAGGCGCT
    GATCCAGGGT TTACTCGTTT TCCAGGGAGG AGTGCTAATG GTAAAACTAA
    GATCGTTCAT TTTGGTGTAA AAGCTGATGA CTTGGCATCA TTCTAATTAC
    AAGCTATATG GGTGACTTGT TATCTTTTAC AGGTGAGTCA CGACGAGCAC
    CTGATAACGG GGAGCGTGGA TGAGCTTTGG GTGGTGTCGG AAGGCAGGGT
    GTCGCCTTTC GCAGGCACGT TCAAGGACTA CAAGAAGATG CTCAAGTCTT
    AATCTAGAGC CAGTGATGAT ATATATACAG AGACAGCGAG TCTACAAAGA
    AAGACACCAA CATATATATC TGTATCGTGC AGCACCGATG TAACATTTAC
    CGGCCTGAGG CCAAATCATC ATTTATGTTT ATTTCATGTG GATTTACTG

    Gene models with high sequence identity

    1. AT1G64550.1 [+] show detail - general control non-repressible 3
      E-value: 0; Score: 72.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR19211 6.39998633403535e-17
    HMMPanther PTHR19211:SF18 6.39998633403535e-17
    superfamily P-loop containing nucleoside triphosphate hyd 4.7e-39
    superfamily P-loop containing nucleoside triphosphate hyd 3.1e-37
    HMMPanther ATP-DEPENDENT TRANSPORTER (ABCF1) PLANT 1.4e-272
    HMMPanther ATP-BINDING TRANSPORT PROTEIN-RELATED 1.4e-272
    HMMPfam ABC transporter-like 1.6e-14
    HMMPfam ABC transporter-like 9e-17
    HMMPfam Protein of unknown function DUF1602 1.1e-08
    ProfileScan ABC transporter-like 12.712
    ProfileScan ABC transporter-like 10.824
    HMMSmart ATPase, AAA+ type, core 5.4e-10
    HMMSmart ATPase, AAA+ type, core 0.0057
    Gene3D no description 4.3e-27
    Gene3D no description 2.1e-27
    PatternScan ABC transporter, conserved site 0
    PatternScan ABC transporter, conserved site 0

    See the detailed result >

    AT1G64550.1

    Model type
    Protein coding
    Short Description
    general control non-repressible 3
    Curator Summary
    member of GCN subfamily
    Computational Description
    general control non-repressible 3 (GCN3); FUNCTIONS IN: transporter activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G60790.1); Has 474431 Blast hits to 318649 proteins in 3825 species: Archae - 8686; Bacteria - 390426; Metazoa - 7720; Fungi - 5127; Plants - 4044; Viruses - 51; Other Eukaryotes - 58377 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR