K17150

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	whole plant flowering stage (PO:0007016)	premature (PATO:0000694) (Adult plant::Flowering::early)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)
T2
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	whole plant flowering stage (PO:0007016)	premature (PATO:0000694) (Adult plant::Flowering::early)
	fruit (PO:0009001)	increased length (PATO:0000573) (Silique::Shape::long)
	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17150

Determination of introduced cDNA(s)

J023121N24 - Rice Full-length cDNAs - Original: J023121N24

full reading [+] show sequence

GGTGGAGACT GGAGACGGGA GAGAGGAGTA GGTAGCAAAC CCTCCTCTTC 
TTCTCTTCTC CTTCGTTGGG CGTGGGCGTC GCGAGAGGCG AGATGGCGGC 
GGCGACGTTG GCGGCGGCGA GCATGGGGGT GGTGACGGAG GTGCTGGGGA 
GCGACGTCGT CGACGAGGTC GACCAGCCCA TCATCGACTA CATCGCCAAC 
GTCCTCGCCG ACGAGGACTT CGACTTCGGC GCCCCCGACG GCCACGGCAT 
CTTCGACGCG CTCGGCGACC TCCTCATCGA CGCTCGGTGC GTCGCCGACG 
AGGAGCACTG CCTCGAGGTC TGCAGTAAGA TTTGTGAAAA ATTTGGAAAG 
CATGGCCTGG TAAAACCTAA ACAAGCTATG CGAAGCCTTG TCACTCCTTT 
ACGTATGAAC GAGGGAATGG ACGATAAGGT TGCCCCCAAA AAGCAAGCTG 
ATGTATTTGA TGGACCCTTG CTTTCATCAC GTGACAAAGC CAAGATTGAA 
CGGAAGAAGA GAAAGGATGA GAGACAAAGA GAGGCTCAAT ACCAAACGCA 
TGTTGCTGAA ATGGAGGCAC TTAGGGCTGG AATGCCTCCA GTATTTGTAA 
ATCACAATAA CTCTGGTGGG CCAGCTGTTA GGGATATCCA TATGGAGAAC 
TTCAGTGTTA CTGTCGTGGT CGTGATCTCA TTCAAGATTG CACTGTAACA 
CTTGCTTTTG GGAGGCACTA TGGTCTTGTT GGAAGAAATG GTACAGGGAA 
AACCTCTTTT CTCAGAGCTA TGGCGATGCA TGCGATTGAT GGGATTCCCA 
AGAACTGCCA GATATTGCAT GTTGAGCAAG AGGTTGTGGG CGATGACACA 
ACAGCTTTGC AGTGTGTTCT GAATGCTGAT ATTGAACGGG TTCAACTTTT 
GCAAGAAGAA GCTCATCTGG TTCAACGGCA GAAAGATCTA GAGTATGAGG 
CTGAGTTTGA GCAGAGCGCG TCCAAAAGCA AGGATGGTCT TGACAAAGAT 
GCTATCAGCA AGAGGCTTGA GGAGATATAC AAACGCCTTG AGTTTATTGA 
TGCTGATGCT GCAGAGGCTC GTGCAGCATC AATTCTGGCG GGTCTTAGTT 
TCACTCCTGA AATGCAACGT AAACGCACAA AACAGTTTTC TGGTGGATGG 
CGCATGAGAA TTGCTCTAGC ACGTGCTCTC TTCATTGAGC CTGATTTGTT 
GCTACTTGAT GAGCCAACAA ATCATCTTGA TCTCCATGCT GTGTTATGGT 
TAGAAACATA TCTCCTGAAA TGGCCAAAGA CATTCATTGT TGTATCACAT 
GCTAGGGAGT TTCTTAATAC GGTCGTCACC GACATTCTTC ATCTGCATGG 
ACAAAAGCTA CATGCTTACA AAGGTGATTA TGACACATTC GAGAGGACAA 
GGGAGGAGCA CCTTAAGAAC CAGCAGAAAG CTTTTGAAAC AAATGAGAAG 
GCCAGATCCC ACATGCAGGC ATTCATTGAC AAGTTCCGTT ACAATGCAAA 
GAGAGCATCA CTTGTTCAAT CAAGAATCAA GGCATTGGAG CGAATGGAGC 
ATGTTGATGC GGTCGTCAGT GATCCAGACT ATAAATTCGA ATTTCCAACA 
CCAGATGACC GCCCTGGACC ACCAATCATC AGCTTCAGTG ACGCATCTTT 
TGGTTATCCT GGAGGCCCCA CCTTATTTAA AAACTTGAAT TTTGGTATTG 
ACCTGGACAG CCGCATAGCA ATGGTTGGTC CAAATGGTAT TGGCAAATCC 
ACTATACTTA AACTAATATC TGGAGATCTT CAGCCAACTT CAGGGACAGT 
GTTCCGCTCT CCCAAGGTTC GCATGGCTGT ATTCAATCAA CACCATGTTG 
ATGGGCTTGA TTTAACAGTG AACCCCCTTT TGTACATGAT GAGATGCTAC 
CCTGGTGTAC CTGAACAGAA ACTGAGGGCA CACTTGGGTT CTTTCGGTGT 
TACAGGAAAT CTTGCCCTCC AACCAATGTA CACTTTATCA GGTGGTCAGA 
AAAGTAGGGT TGCCTTTGCA AAGATCACCT TCAAGAAGCC ACACATTATT 
CTTCTCGATG AGCCTTCTAA CCATCTTGAT CTGGATGCTG TGGAGGCGCT 
GATCCAGGGT TTACTCGTTT TCCAGGGAGG AGTGCTAATG GTAAAACTAA 
GATCGTTCAT TTTGGTGTAA AAGCTGATGA CTTGGCATCA TTCTAATTAC 
AAGCTATATG GGTGACTTGT TATCTTTTAC AGGTGAGTCA CGACGAGCAC 
CTGATAACGG GGAGCGTGGA TGAGCTTTGG GTGGTGTCGG AAGGCAGGGT 
GTCGCCTTTC GCAGGCACGT TCAAGGACTA CAAGAAGATG CTCAAGTCTT 
AATCTAGAGC CAGTGATGAT ATATATACAG AGACAGCGAG TCTACAAAGA 
AAGACACCAA CATATATATC TGTATCGTGC AGCACCGATG TAACATTTAC 
CGGCCTGAGG CCAAATCATC ATTTATGTTT ATTTCATGTG GATTTACTG

Gene models with high sequence identity

AT1G64550.1 [+] show detail - general control non-repressible 3
E-value: 0; Score: 72.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PTHR19211	6.39998633403535e-17
HMMPanther	PTHR19211:SF18	6.39998633403535e-17
superfamily	P-loop containing nucleoside triphosphate hyd	4.7e-39
superfamily	P-loop containing nucleoside triphosphate hyd	3.1e-37
HMMPanther	ATP-DEPENDENT TRANSPORTER (ABCF1) PLANT	1.4e-272
HMMPanther	ATP-BINDING TRANSPORT PROTEIN-RELATED	1.4e-272
HMMPfam	ABC transporter-like	1.6e-14
HMMPfam	ABC transporter-like	9e-17
HMMPfam	Protein of unknown function DUF1602	1.1e-08
ProfileScan	ABC transporter-like	12.712
ProfileScan	ABC transporter-like	10.824
HMMSmart	ATPase, AAA+ type, core	5.4e-10
HMMSmart	ATPase, AAA+ type, core	0.0057
Gene3D	no description	4.3e-27
Gene3D	no description	2.1e-27
PatternScan	ABC transporter, conserved site	0
PatternScan	ABC transporter, conserved site	0

See the detailed result >

AT1G64550.1

Model type: Protein coding
Short Description: general control non-repressible 3
Curator Summary: member of GCN subfamily
Computational Description: general control non-repressible 3 (GCN3); FUNCTIONS IN: transporter activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G60790.1); Has 474431 Blast hits to 318649 proteins in 3825 species: Archae - 8686; Bacteria - 390426; Metazoa - 7720; Fungi - 5127; Plants - 4044; Viruses - 51; Other Eukaryotes - 58377 (source: NCBI BLink).
Link: InterPro Scan - TAIR