K17217

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17217

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17217

Determination of introduced cDNA(s)

  • J023055B17 - Rice Full-length cDNAs - Original: J023055B17

    full reading [+] show sequence

    Nucleotide sequence: J023055B17 - full reading 
    GAACGCCTCG TCTGAACACA AAACCCCGTA AAAATCTCCG CCTCCGCCAC 
    CGCCACCGCC GCCGACGCCG CCATGGCCGC CACCGCCGCC GCGGCCCACA 
    CCCTCCTCCA CCTCGCGGCC CCGAGGAAGC CCTCCGCGGG GCCCCCACTC 
    CCGCCCGCCA CCCAACCCCA ACGGGATCCT CGTCGCATAT CGATGTTGAC 
    GTGGCGACGG AGGCCGACCT GAGGGAGAAC GGGTTCCGGA GCACGCGGCG 
    CACCAAGCTC GTCTGCACCG TGGGGCCCGC CTCCTGCGGC GCCGACGAGC 
    TGGAGGCGCT CGCCGTCGGC GGGATGAACG TCGCGCGCGT CAACATGTGC 
    CACGGGGACC GGGAGTGGCA CCGGGGCGTC ATCCGCGCGG TGCGGAGGCT 
    CAACGAGGAG AAGGGGTTCG CCGTCGCCGT CATGATGGAC ACCGAGGGGA 
    GCGAGATCCA CATGGGGGAC CTCGGCGGCG CCGCCGCCGC CAAGGCGGAG 
    GATGGAGAAA TATGGACATT TAGCGTAAGA TCCTTTGAGG CACCTCCCCC 
    AGAACGAACT ATTCATGTGA ACTACGAAGG CTTCGCTGAA GATGTGAGAG 
    TTGGTGATGA GCTTCTTGTT GATGGTGGCA TGGCTCGGTT TGAGGTGGTT 
    GAGAAATTAG GACCAGATGT CAAGTGCCGT TGCACAGATC CTGGTTTGTT 
    GCTGCCACGT GCCAATCTTA CATTTTGGCG GGATGGTAGT ATTGTCCGTG 
    AGAGGAACGC TATGCTACCT ACCATTTCAT CAAAGGATTG GCTTGACATA 
    GACTTTGGAA TTTCTGAAGG CGTAGATTTT ATTGCAGTTT CGTTTGTCAA 
    ATCTGCAGAA GTAATTAACC ATCTGAAAAG CTATATAGCT GCAAGGAGCC 
    GTGGCAGCGA TATAGCAGTC ATTGCCAAGA TCGAGAGCAT TGACTCTTTG 
    AAGAACTTGG AGGAGATAAT CCGTGCTTCA GATGGTGCCA TGGTAGCCCG 
    AGGGGATATG GGTGCACAAA TTCCCTTGGA GCAAGTCCCC TCAGTACAAC 
    AAAAGATAGT TAAACTGTGC AGGCAGCTCA ACAAGCCAGT CATTGTTGCG 
    TCGCAGCTTC TTGAATCGAT GATTGAGTAT CCTACGCCCA CCAGGGCCGA 
    GGTTGCTGAT GTTTCTGAAG CAGTTCGTCA GCGTGCAGAT GCGCTTATGC 
    TTTCAGGTGA GTCAGCAATG GGGAGATATC CAGAGAAAGC TCTTAGTGTC 
    CTCCGGAGTG TTAGCCTAAG GATTGAGAAG TGGTGGAGAG AGGAGAAGCG 
    CCATGAGGAA CTGGAACTTA AAGATGTTTC ATCTTCCTTC TCTGACAAAA 
    TATCAGAAGA AATCTGCATT TCGGCCGCTA AAATGGCCAA CAAATTGGAG 
    GTAGATGCCG TTTTCGTCTA CACAAACACT GGCCACATGG CCTCACTGCT 
    CTCGCGGTGC CGTCCTGACT GCCCGATCTT CGCCTTCACG ACCTCGACAT 
    CTGTGAGGAG ACGATTGAAC CTCCAATGGG GCCTCATCCC CTTCCGCCTC 
    AGCTTCTCGG ACGACATGGA GAGCAACCTG AACCGTACCT TCTCGCTGCT 
    CAAGGCCAGG GGCATGATCC AGTCCGGCGA CCTTGTCATC GCGCTCTCCG 
    ACATGCTGCA GTCCATCCAG GTCATGAACG TACCTTGAGA ATCATCATGC 
    TCCCCTCTCG TGTTTGTTTG TTCTGCCCAA AACGGAACAC GGCTTTAGTT 
    GACATCATCT TAGGGGCGGT TTTCTGGTTT GAAATTTATT CGTTTGTTCT 
    CCATTGTGTT AGACGACAGA ACCAGAGAAT GTTACAACAA TAATGCTGCA 
    ACTTCCAGCG CGTTGTAAAC TCTATGCTAT TTAGCCTGAT GTATAAGGCC 
    ATGAACTGTT TTGTCGCTTA CTATGATAGG CTATGTATTT ACCAATAAAC 
    CCTTCTATTT AAGCTATGTA AGAATTTTCC TCATCAGAAA TTACTCCTTG 
    CTAGAGCCCA GTAAAGATTC TTT

    Gene models with high sequence identity

    1. AT3G22960.1 [+] show detail - Pyruvate kinase family protein
      E-value: 0; Score: 800.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Pyruvate kinase, barrel 7.8e-56
    FPrintScan Pyruvate kinase, barrel 7.8e-56
    FPrintScan Pyruvate kinase, barrel 7.8e-56
    FPrintScan Pyruvate kinase, barrel 7.8e-56
    FPrintScan Pyruvate kinase, barrel 7.8e-56
    FPrintScan Pyruvate kinase, barrel 7.8e-56
    FPrintScan Pyruvate kinase, barrel 7.8e-56
    Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 2.8e-78
    Gene3D Pyruvate kinase, alpha/beta 2.2e-24
    HMMPanther Pyruvate kinase 2e-180
    HMMPfam Pyruvate kinase, barrel 1.3e-92
    HMMPfam Pyruvate kinase, alpha/beta 1.3e-23
    superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 1.7e-79
    superfamily Pyruvate kinase, C-terminal-like 2.9e-32
    superfamily Pyruvate kinase, beta-barrel-like 0.00000000000072
    PatternScan Pyruvate kinase, active site 0
    HMMTigr Pyruvate kinase 2.5e-124

    See the detailed result >

    AT3G22960.1

    Model type
    Protein coding
    Short Description
    Pyruvate kinase family protein
    Curator Summary
    encodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds.
    Computational Description
    PKP-ALPHA; FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis, lipid metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: plastidic pyruvate kinase beta subunit 1 (TAIR:AT5G52920.1); Has 10289 Blast hits to 10239 proteins in 2715 species: Archae - 167; Bacteria - 6049; Metazoa - 538; Fungi - 221; Plants - 529; Viruses - 0; Other Eukaryotes - 2785 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR