K17223

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17223

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17223

Determination of introduced cDNA(s)

J013037E09 - Rice Full-length cDNAs - Original: J013037E09

full reading [+] show sequence

GAATAAATCT CTTTACCTAG TTCGGCTTGG GCCTCGCACC GACTCCGACT 
CCGACCCCGA CTCCGACTCG CCGCCGCCCT TGCGCCGCCT CCGCGGAGCC 
CTCCCCTCCC CGCCGGCGGC GTCTGCGAAG CGACTGGATT GGATGGCATC 
GAGGGTTCCG TCTCCACCGT GCGCGGCGGC GCGGTCCGGT TGGGCTGTCC 
CGATGGTCTC CGTCCGGCCG GCGAGATCCG GCGTGGCGAG AGGACGTGCT 
GTGGTGTGCG CCGTTATCTT CAGGCCGTGT ATCGATATTC ATAAGGGGAA 
AGTTAAACAG ATTGTTGGCT CTACTCTTCG GGATTCATCA AACGATGGCA 
CGGCACTTGT TACAAATTTT GAATCAGACA AACCTCCAGC AGAATTTGCA 
AATATATAAA GAGGATGAAC TTATTGGTGG ACATGTAATC ATGCTTGGTG 
CAGATCCTGC TAGTCAAGCT GCTGCCATGG AAGCACTACA TGCATATCCT 
GTATGTGTTT AGTGAAGGCA AAATGAACAT TGAACGGCTG AAGCAACTTG 
TCGATCTGGT TGGGAAACAT AGGCTTGTTT TGGACCTTAG TTGTAGAAAA 
AAGGATGGAA GATATGCCAT CGTGACTGAC AGATGGCAGA AATTCAGTGA 
TGTCTTTGTG GATGAGCCAA CATTAAAACA TCTTGCTGCC TATGCAGATG 
AATTTTTGGT TCATGGTGTT GATGTGGAGG GGAAAAGGTT AGGAATTGAT 
GAAGAACTTG TCGAACTATT GGGACGTTAT TCACCTATAC CTGTAACTTA 
TGCTGGGGGT GTGTCTACAA TGGATGACCT AGAGAGGATA AAAAGAGCAG 
GCAACAGTCG AGTTGATGTT ACGGTTGGGA GTGCCCTTGA TATATTCGGA 
GGAGATTTGC CCTACAAGGA CGTCGTTCTT TGGCACAAGG AACAAAATAT 
GGTTAGCCAA CCATGATATA TCAGAGGTAT AATGCTTAAC CTGTTCCATC 
AGCTCGATTG TTATGCACAG ACCTCCAGGG TCTAGAAGTA ATGCTAATGC 
ATTTTCTCAA GTGTTGTACT GCGAATAATT CGATGGGTCT TCTGTGGTAT 
AAGTTCAAGC TGAAGGGTTC GATTTTGTTC GGATCTGGAA CTAGGCTTTA 
CATTGAGGAC TGGCCGAGCT GTTTATCAAG CGACTGCACT ATATGTTTTT 
GAGATTAAAA CACTGTTAAC ATGATATGTA AGCACATCTA CTGAGTTAGC 
CCGTCTGATG GTGAAACATA ATGGGGGCCT CCACTAGTCC ACAGCTCATT 
AATCATACTC

Gene models with high sequence identity

AT2G36230.1 [+] show detail - Aldolase-type TIM barrel family protein
E-value: 1e-90; Score: 57.40

InterPro Scan Digest

Program	Description	E-value
superfamily	Ribulose-phosphate binding barrel	1.3e-19
HMMPanther	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic	2.7e-20
HMMPanther	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic	6.7e-08
HMMPanther	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic	1.2e-60
HMMPfam	Histidine biosynthesis	1.4e-16
Gene3D	Aldolase-type TIM barrel	1.8e-17

See the detailed result >

AT2G36230.1

Model type: Protein coding
Short Description: Aldolase-type TIM barrel family protein
Curator Summary: Encodes a BBMII isomerase involved in histidine biosynthesis.
Computational Description: ALBINO AND PALE GREEN 10 (APG10); FUNCTIONS IN: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis (InterPro:IPR006062), Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic (InterPro:IPR011858); Has 5178 Blast hits to 5176 proteins in 1344 species: Archae - 226; Bacteria - 3159; Metazoa - 0; Fungi - 140; Plants - 59; Viruses - 0; Other Eukaryotes - 1594 (source: NCBI BLink).
Link: InterPro Scan - TAIR