K17237

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17237

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17237

Determination of introduced cDNA(s)

  • J013151D08 - Rice Full-length cDNAs - Original: J013151D08

    full reading [+] show sequence

    Nucleotide sequence: J013151D08 - full reading 
    GAATTTCTCT CGATCGGTTC GATCCCATGA CCATGTGAGG GGGATGATGC 
    CGGAGGCGGC TCTGAGCTCC GGCAAGCCGA TGCCGCGGGT CGGCATGGGC 
    ACGGCTTCGT TCCCGCTCGG CGCGACCGAC CCGTCGACGG TGAAGGATGT 
    CGTCCTGCGC GCCATCGAGG CCGGCTACCG GCACTTCGAC ACGGCGGCCG 
    TGTACCAGAC GGAGGCCATC CTCGGCGACG CCGTGGCGGA GGCGGTGCGC 
    GCCGGCCTCG TCGCGTCGCG GGACGAGCTC TACATCACGT CCAAGCTATG 
    GGTTGCCCAC GCGCACCCCG GCCATGTCCT GCCATCTCTT AGGCGTGCGC 
    TCCGGAAGAT GCAGATGGAG TATCTCGATC TGTACCTGAT TCACTTTCCG 
    GTGAGCATGA GGTTGGCTGA AGATCCGGAG TCAATGACAT ATTCCAAGGA 
    TGACCTTGTG ATGATGGACA TGGAGGGAGT GTGGAAGGAG ATGGAGGAGT 
    GCCAAAGGCT AGGACTCACC AAGGCTATTG GTGTTAGCAA CTTCAGTTGC 
    AAGAAGCTCG AGACATTGCT CTCCTTCGCA ACCATCTCTC CTGCAGCAAA 
    TCAAGTTGAG GTGCACCCCT ACTGTCGGCA AAATAAATTG AGGGAGTTCT 
    GCAAGGAGAA AGGAATTCAG CTCTGTGCCT ACTCTCCTTT AGGTGGAAAG 
    GGTACACCAT GGAGCAACAA TGCTGTCATG GATTGTCCTC TTCTCAAACA 
    GATTGCCATG GAGAGGGGTA AAACTATTGC CCAGGTATGC TTGAGGTGGG 
    TGTATGAGCA AGGAGATTGT GTAATCGTCA AGAGCTTCAA CAAGAGCAGG 
    TTAAGAGAGA ATCTAGGCAT CTTTGATTGG GAGCTCACCA ATGATGATCG 
    TCACAAGATA AGCACCCTCC CAGAGTGGAG GGGAACTCTT GACATCTTCG 
    TCCACAAAAC CGGTCCATAT AAAACAGTTG ATGAGTTTTG GGACGGCGAG 
    ATTACTGGTG ACAAGACTTT TTCTAATGGT CCCTGATCAA TGCTAGCCCA 
    GCCAATGAAT GGACTGCTCA AGAAGAATTC AAATTTCGTG TACCAGAGTC 
    CAACATACTT TTCCTCATGG TGCACACATG TTATGTCCTT TTGTGAATGA 
    AAGTATACTA GTCGTCAAAA TCTCC

    Gene models with high sequence identity

    1. AT1G59960.1 [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
      E-value: 3e-89; Score: 325.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Aldo/keto reductase subgroup 4.1e-50
    FPrintScan Aldo/keto reductase subgroup 4.1e-50
    FPrintScan Aldo/keto reductase subgroup 4.1e-50
    FPrintScan Aldo/keto reductase subgroup 4.1e-50
    FPrintScan Aldo/keto reductase subgroup 4.1e-50
    superfamily Aldo/keto reductase 7.3e-87
    PatternScan Aldo/keto reductase, conserved site 0
    PatternScan Aldo/keto reductase, conserved site 0
    PatternScan Aldo/keto reductase, conserved site 0
    HMMPfam Aldo/keto reductase 4.8e-57
    HMMPanther ALDO-KETO REDUCTASE 3.2e-100
    HMMPanther Aldo/keto reductase 3.2e-100
    Gene3D Aldo/keto reductase 3.7e-89

    See the detailed result >

    AT1G59960.1

    Model type
    Protein coding
    Short Description
    NAD(P)-linked oxidoreductase superfamily protein
    Computational Description
    NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G59950.1); Has 18939 Blast hits to 18918 proteins in 2314 species: Archae - 331; Bacteria - 12289; Metazoa - 1736; Fungi - 1658; Plants - 1296; Viruses - 0; Other Eukaryotes - 1629 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR