K17245

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17245

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K17245

Determination of introduced cDNA(s)

  • J013064D20 - Rice Full-length cDNAs - Original: J013064D20

    full reading [+] show sequence

    Nucleotide sequence: J013064D20 - full reading 
    TGCTCGCAAA ACTCACCCAA AAGAGCAGCG TCGCCTCTCC TCCTCCTCCC 
    TAACCCCTAC GCTTCCAGAA CCTTCTCGAA GCTCCCGCTC CCCCCCCCCT 
    TCCGCTCCAA TGGCGAAGGA ACCGATGCGC GTGCTCGTCA CCGGCGCCGC 
    AGGACAAATT GGATATGCTC TTGTCCCCAT GATTGCTAGG GGTGTGATGT 
    TGGGTGCTGA CCAGCCTGTT ATTCTACACA TGCTTGACAT TCCACCAGCT 
    ACTGAATCTC TTAATGGCCT TAAGATGGAG CTGGTTGATG CTGCATTTCC 
    TCTTTTGAAG GGAATTGTCG CAACAACTGA TGTTGTGGAG GCCTGCACTG 
    GTGTGAATGT TGCGGTTATG GTTGGTGGGT TCCCCAGGAA GGAGGGAATG 
    GAAAGGAAGG ATGTTATGTC AAAAAATGTC TCCATCTACA AATCCCAAGC 
    TTCTGCTCTT GAGGCTCATG CAGCCCCTAA CTGCAAGGTT CTGGTAGTTG 
    CCAATCCAGC AAACACCAAC GCTCTCATCT TAAAAGAATT CGCTCCATCC 
    ATCCCTGAGA AGAACATTAC TTGCCTCACC CGTCTTGACC ACAACAGGGC 
    ACTTGGCCAG ATCTCTGAAA AACTTAATGT CCAAGTTACT GATGTGAAGA 
    ATGCGATCAT CTGGGGCAAC CACTCATCCA CCCAGTACCC TGATGTTAAC 
    CACGCCACTG TGAAGACTCC CAGTGGAGAG AAGCCTGTCA GGGAACTCGT 
    TGCTGATGAT GAGTGGTTAA ATACGGAATT CATCTCTACC GTCCAGCAGC 
    GTGGTGCCGC CATCATCAAG GCGAGGAAGC AATCCAGTGC CCTATCTGCT 
    GCCAGCTCTG CATGCGATCA CATTCGTGAC TGGGTTCTTG GCACTCCTGA 
    GGGAACATTT GTCTCCATGG GTGTGTACTC TGATGGTTCG TATGGTGTGC 
    CTGCTGGTCT GATCTACTCG TTCCCAGTAA CATGCAGTGG TGGCGAATGG 
    ACGATTGTTC AGGGTCTCCC GATCGACGAG TTCTCAAGGA AGAAGATGGA 
    CGCGACTGCC CAGGAGCTGT CGGAGGAGAA GACGCTCGCT TACTCATGCC 
    TCAACTAAAA CTAAGCAATA CCCAGAGGGA CAGATAGTGA GCGATTGCCC 
    GCTCCCGTGT TTTTGAATAA AAGAGACTTT TAAGTTCCAT CACATAGAAA 
    CTGTTTATCT CAGACCGCTG CACATCGCGA GATGTGGAGC GCAGATGCCG 
    TTGCTGGTTT TACTCCAGTG TGTATTGAGG CTTTGTACTA GCTCCCTTTT 
    TTTTGCCTGG TGATTCGCAG GACATTTGCT GAAAACATTG AACCCATTTG 
    ACATCTGATG GAATCATGGA CCAGTAGCAA GTACATTTTG CG

    Gene models with high sequence identity

    1. AT5G43330.1 [+] show detail - Lactate/malate dehydrogenase family protein
      E-value: 5e-166; Score: 581.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR L-lactate/malate dehydrogenase 4.3e-64
    superfamily Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 1.7e-60
    superfamily NAD(P)-binding domain 1.2e-44
    PatternScan Malate dehydrogenase, active site 0
    HMMTigr Malate dehydrogenase, NAD/NADP 3.6e-239
    HMMTigr Malate dehydrogenase, NAD-dependent, cytosolic 2.3e-267
    HMMPfam Lactate/malate dehydrogenase, C-terminal 1.2e-41
    HMMPfam Lactate/malate dehydrogenase, N-terminal 8.4e-33
    Gene3D NAD(P)-binding domain 2.5e-51
    Gene3D Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 3.6e-71
    HMMPanther Malate dehydrogenase, NAD/NADP 3e-129

    See the detailed result >

    AT5G43330.1

    Model type
    Protein coding
    Short Description
    Lactate/malate dehydrogenase family protein
    Computational Description
    Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT1G04410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR