K17303

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17303

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17303

Determination of introduced cDNA(s)

  • J023126M20 - Rice Full-length cDNAs - Original: J023126M20

    full reading [+] show sequence

    Nucleotide sequence: J023126M20 - full reading 
    TTTGAAGAGG ATGATGATGA GAAGTTTAAT GGATCTGATT TGTCAAATGA 
    TGGAAATCGA TTTTGGGGTG ATGTGTTCAC GATAACATAC CAGAAGGCTG 
    ATAGCCAGGC TGAGAAGGTA TCCCAAGGTG GTTCCACCTC GTTGAACTCA 
    AAATCAGATC CTTCAAGATC TATATCTGAA TTGAAAGGTG TTTCTCTCCT 
    TGATAGCATC TTACAGGCAG AACTCCCATG TGATCTAGAG AGAACAAACT 
    CAACTTACAA CATTTTAGCA CTATTGCGTG TATTAGAGGG GCTCAATCAG 
    TTGTCCCCTC GTTTAAGAGT ACATGCTGCT TCTGATGATT TTGCTGAGGG 
    AAAAATCACC ACACTGGATG AGCTATATAG AACTGGAGCC AAGGTACCGT 
    CAGAAGAGTT TGTTAATAGT AAGTTGACAC CAAAGCTTGC TCGGCAAATG 
    CAGGATGTTC TTGCCCTCTG TAGTGGCAGT TTACCTTCTT GGTGTTACCA 
    GATGACCAAA GCCTGCCCTT TCTTGTTTCC CTTTGAAACA AGGAGACAGT 
    ACTTTTACTC CACAGCATTT GGGTTGTCCC GTGCTTTGAA TCGACTTCAG 
    CAACAACAGG GTGACAACCA AAATGCTGGT GGCGAAAGGG AGATCCGATT 
    TGGAAGGCTA CAACGTCAAA AAGTTCGTGT TTCCCGTAAC CGTATTCTGG 
    ATTCTGCTGC T

    Gene models with high sequence identity

    1. AT4G38600.2 [+] show detail - HEAT repeat ;HECT-domain (ubiquitin-transferase)
      E-value: 1e-83; Score: 306.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther HECT UBIQUITIN-PROTEIN LIGASE 3 (KAKTUS PROTE 4.2e-57
    HMMPanther HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 4.2e-57

    See the detailed result >

    AT4G38600.2

    Model type
    Protein coding
    Short Description
    HEAT repeat ;HECT-domain (ubiquitin-transferase)
    Curator Summary
    encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.
    Computational Description
    KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 6273 Blast hits to 5534 proteins in 324 species: Archae - 2; Bacteria - 240; Metazoa - 3391; Fungi - 909; Plants - 600; Viruses - 3; Other Eukaryotes - 1128 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR