K17308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17308

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17308

Determination of introduced cDNA(s)

  • J023055E16 - Rice Full-length cDNAs - Original: J023055E16

    full reading [+] show sequence

    Nucleotide sequence: J023055E16 - full reading 
    GTGGTAAGAG AGAGGAGATA GAGAGAGCTG TACTAACTGA TGAACTGCTC 
    TCATGCAAGC CAGATTACCA TAAAGATTGG GTCATAAGCA CTGTTGTTAG 
    GTTATCAATG GGAAATAGTT TTCATGGACG TTATTGGCCG TGAATCCCAA 
    GTGGTGTGGC TAATCTCTCC AAACTAATAA AAGTTCATAA TCTGAACACA 
    AGATTTGATG AGAGATTCAA CCAAGAAGCT GAAATTTTTT GCACCTGATG 
    TGCATTGCTG AACCAATTTT CTGTTGCATA AAGAGTCCTG AAACTTCATG 
    TTGCAAACTG AAGCGTGATG TTCTAACATT TTTCCATTGG AGCTTTCACT 
    GGTTTCTTCA GAACTGAAAT CTTTCTTGCT TTCTCATCAG CTTCTCATGC 
    ATCTTTCTGC AGGGTTTCTT TCATGTAGGG AAAGGAAAGG TGATTTCAGT 
    TGCCTGACTG CTGCCAGAAT CTGCGAAGCA TCTACAAGCG ACGCCGTCGT 
    TCAGGCAGCC GGCACGGCAA TGCCGGTTCC CCTTGCTCCA TACCCAACCC 
    CGCCTGTGCC ATTTACACCT CCCAATGGGG CTCAAAGCCA GCTCGTGTGC 
    TCTGGGTGCC GTAATCTGCT CATGTATCCA GCCGGAGCAA CGTCGGTTTG 
    CTGCGCAGTT TGCAGTACCG TGACTGCTGT GCCTGCTCCT GGAACCGAGA 
    TGGCGCAGTT AGTTTGCGGA GGATGCCACA CTCTCCTGAT GTATATACGC 
    GGTGCGACGA GTGTGCAATG TTCTTGCTGT CACACTGTCA ACCTGGCTAT 
    GGAAGCAAAT CAAGTTGCGC ATGTAAACTG CGGGAACTGC CGTATGCTGC 
    TCATGTACCA GTATGGCGCA AGGTCTGTCA AATGCGCAGT CTGCAATTTT 
    GTGACATCAG TTGGGGCCTC ACCTGGTACA GACCAGAAGC CCAGCAGCTG 
    AACTGCTGAA GTGCCATAAA TATTCAGAAA AGAGCTTCTC AAACCGATGC 
    TTTGAGTGCA CATGTATAGA GTTCTTCCCT GAAGCATTTT TTTTCTTCCT 
    TTTTTATCTC CCTTTCCCCC CAATTTCCAC CTTCCTTCCT TGGATATGGA 
    GAGAGCCTGC GGAATAAATG AGAGTTTTGC TAAATACCTA GTGCTCAAAA 
    TTCGTCGAAT CGTCTGTATG ACCGAACAAG ATTGACATAT TATTTACATA 
    AACCTATGAT AATATTTATG C

    Gene models with high sequence identity

    1. AT1G32540.3 [+] show detail - lsd one like 1
      E-value: 5e-49; Score: 192.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Zinc finger, LSD1-type 8.9e-10
    HMMTigr Zinc finger, LSD1-type 3.7e-11
    HMMTigr Zinc finger, LSD1-type 1.1e-08
    HMMPfam Zinc finger, LSD1-type 1.6e-11
    HMMPfam Zinc finger, LSD1-type 3.7e-12
    HMMPfam Zinc finger, LSD1-type 1.8e-11

    See the detailed result >

    AT1G32540.3

    Model type
    Protein coding
    Short Description
    lsd one like 1
    Curator Summary
    Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.
    Computational Description
    lsd one like 1 (LOL1); FUNCTIONS IN: DNA binding; INVOLVED IN: induction of apoptosis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LSD1 zinc finger family protein (TAIR:AT4G20380.7); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR