K17329

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17329

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17329

Determination of introduced cDNA(s)

  • J013098B11 - Rice Full-length cDNAs - Original: J013098B11

    full reading [+] show sequence

    Nucleotide sequence: J013098B11 - full reading
    GTCCTGCTCG GCTTCCCCCC CAACCCCCGC CTTCTCCCCT CCGACTCCGG 
    CCACCTCCGC GGCGGCGGAG CATCCTAGGG TTTCGCGCCG GCTCGCCGCC
    GGCGTACGGA GAGGGAGGGT GTAACACGCG CAGGCCTGCG CCGTCGTCCT
    GCTCTGGGAA CTTCCGCGTG CAGCGAGGGA TGGACGAGTG GGTTCGCCAG
    GCCGAGGTGT GGGTGGGACA AGCCGAGAGG TGGATCCGGC AGCAGCCTCC
    CGAGCAGGTT TACGTCGCCG TCGCGGTGGT CGCCGTGACG GTTCTGTTGC
    TGGTCGCAGT TTCGTGCCTG AAATCCTCGA AAGCAAACAC CATAGTGCTA
    TCTGGGCTCA GTGGTAGTGG CAAAACTATT CTCTTCTACC AGCTTCGGGA
    TGGATCAACA CATCAAGGAA CTGTGACTTC AATGGAACAA AACAACGATA
    CTTTCGTGCT TCATTCTGAG CTGGAGAGGA GAGGCAAAGT AAAACCTGTT
    CATGTTGTTG ACGTTCCTGG TCATGCAAGG CTCAAACCCA AACTTGATGA
    AGTCCTGCCT CAAGCAGCTG GAATAGTTTA TGTTGTTGAT GCTCAAGATT
    TCTTGTCTAC CATGCATGCT GCTGCAGAGT ACTTGTATGA CATCCTGACA
    AAGGCAACTG TAGTGAAGAA GAGGGTTCCT GTTCTGATAT TCTGCAACAA
    GACAGATAAA GTTACAGCTC ACTCAAAAGA ATTCATCAAG AAGCAATTGG
    AAAAGGAATT AAACAAGCTC CGGGAATCAA GGAACGCCAT ATCATCTGCT
    GACATCACTG ATGAAGTCAA GCTTGGGAAC CCTGGAGAAG CATTTAATTT
    CAGCCAATGC CAGAACAAGG TGACAGTTAC TGAAGGTGCT GGTCTGACCG
    GTAATGTTTC AGCGGTTGAG GAGTTCATTC GTGAGTATGT GAAAGCTTAG
    GCCTTAGAGT TGTCGGACCT TTACAGAATA GAGTTTGTAT TCGTTCAAAA
    TTGTCATCTA AGCGGAGACT GATTTTCCTG ATGGAAGAAG GAAAACCTTC
    ATCATCTCAT CTGCATCTGC TTCATTCCAT TCATGCGTGT GAGAAATTTC
    AACATTTTCT TGAAAGGAAA GCATCGGACA TTCAGTTG

    Gene models with high sequence identity

    1. AT5G05670.2 [+] show detail - signal recognition particle binding
      E-value: 2e-80; Score: 296.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUB 1.9e-47
    superfamily P-loop containing nucleoside triphosphate hyd 1.4e-29
    Gene3D no description 6.5e-51
    Coil coiled-coil 0
    HMMPfam Signal recognition particle receptor, beta subunit 8.1e-38
    ProfileScan ARF 8.81

    See the detailed result >

    AT5G05670.2

    Model type
    Protein coding
    Short Description
    signal recognition particle binding
    Computational Description
    signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle receptor, beta subunit (InterPro:IPR019009); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR