K17334

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17334

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17334

Determination of introduced cDNA(s)

  • J013056B07 - Rice Full-length cDNAs - Original: J013056B07

    full reading [+] show sequence

    Nucleotide sequence: J013056B07 - full reading 
    GATCTCCCCA TCCGCCATTG TTGTGTTCTC ATCCTCTTCT TCCATCTCTC 
    TCTCTGTGCG TGCTCTCCGA CGTCTCTCCT CTCCCTCTCG CGTGCTTGGT 
    CGCTGTAGGA GGGGGTTCAA TTGATTTGAG GTAGCCATGG CTGAGGCACT 
    GTGCAGCGGC AGCGTCGCGT CCCCGTGCGG GGAGGTGGGT GTGGGGTTCG 
    CCGCCGGCCT TGTGAGGGGC GCCGCGGCGG CGGCGGCGCT CGCGGAGTCT 
    GTGCCGATTG GTGGGTACAG CAGCAAGAGC ACGTTCCCGA GTGGGAGGGT 
    GGCGCTCACG GAGAGGAAGG CGAGGCCCCT GCCACGGAAT CTCGAAGCGG 
    CGCATGGGCA GATGAACCTG ACGATTGGGA AGGCCATGAG GTGGTGGGAG 
    AAGTGCCTGC AGCCCAACAT GAGGGAGATC GAGTCGGCGC AAGACCTCGC 
    CGACTCCCTC CTCAACGCCG GCGACAAGCT CGTCGTCGTC GACTTCTTCT 
    CCCCGGGCTG CGGTGGCTGC CGCGCCCTAC ACCCCAAGAT TGCTCAACTA 
    GCCGAGAAGA ACCCGGAGGT GCTGTTCTTG CAAGTGAACT ACGAGAAGCA 
    CAAGTCAATG TGCTACAGCC TCCATGTTCA TGTTCTGCCA TTCTTCAGGT 
    TCTACAGGGG AGCTCAGGGC CGTGTCAGCA GCTTCAGCTG CACAAACGCA 
    ACTATCAAGA AGTTCAAGGA TGCACTTGCC AAGCATGGTC CGGACAGGTG 
    TGGCCTCGGC CCGGCGAAGG GGCTCGAGGA GTCGGAGCTC ATGGCGTTGG 
    CCATAAACAG GGACCTGAAC TTCACCTACA CACCAAACCA AGACCTTGTC 
    CCAATTGCAG ACGCCCTCCT GAAGGAAGCT GCTGCACCTG GAGGTCCATG 
    GCTGCCATTG CCCGCAACGG CGACGCAGCT GTTCATTCAG GGATCTGAGA 
    ATTCGCTGTT GTCATCTGGA AGATAGCCGG TGGTTCGACG GCAAGATTGG 
    CTTCAATTTG TACATATTTT TCCGCTTGTT CTAGCCTGAT GTTATGACAT 
    GCTGATGCGC AGGCTCATGA TTTTTGTTTA TGAGCCTGCT GAGTGCTGGA 
    GGCATGAAAT TCCTTGCCTG ACGGACCTGT ATGCGTGATG CACGTCTGCA 
    TCGAAAATTG AACATGCTAG ATTCATTCAT GAT

    Gene models with high sequence identity

    1. AT1G08570.2 [+] show detail - atypical CYS HIS rich thioredoxin 4
      E-value: 1e-73; Score: 274.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioredoxin-like fold 7.1e-30
    HMMPfam Thioredoxin domain 0.0000000000000058
    Coil coiled-coil 0
    HMMPanther THIOREDOXIN-LIKE 5.4e-73
    HMMPanther Thioredoxin, core 5.4e-73
    ProfileScan Thioredoxin-like 10.721
    Gene3D Thioredoxin fold 1.8e-18

    See the detailed result >

    AT1G08570.2

    Model type
    Protein coding
    Short Description
    atypical CYS HIS rich thioredoxin 4
    Curator Summary
    Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.
    Computational Description
    atypical CYS HIS rich thioredoxin 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 3 (TAIR:AT2G33270.1); Has 2537 Blast hits to 2529 proteins in 580 species: Archae - 19; Bacteria - 606; Metazoa - 627; Fungi - 356; Plants - 522; Viruses - 3; Other Eukaryotes - 404 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR