K17335

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17335

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17335

Determination of introduced cDNA(s)

  • J023148L05 - Rice Full-length cDNAs - Original: J023148L05

    full reading [+] show sequence

    Nucleotide sequence: J023148L05 - full reading
    GACTCCAGTA CTCCACCACA AGCTCTAGCT TACAGCTCAC TACCAGCGTA 
    CATTGTTGCT AGTTAGCTAG AGCTAGATCT CGATCGAGAC AATGGCGGGT
    GCTCGCAGGA CGATGGCGCT GGTTGCGTTG GTGGCGGTGG TGGCGGCGGC
    GGTGGTGGCG GAGAGGGCGT CGGCGGCGGT GAGCTGCGGC GACGTGACGT
    CGTCGATCGC GCCGTGCCTG TCGTACGTGA TGGGGAGGGA GAGCTCGCCG
    TCGTCGTCGT GCTGCAGCGG GGTGAGGACC CTCAACGGCA AGGCCTCCTC
    CTCCGCCGAC CGCCGCACCG CCTGCAGCTG CCTCAAGAAC ATGGCCTCCT
    CCTTCAGGAA CCTCAACATG GGCAACGCCG CCTCCATCCC CAGCAAATGT
    GGCGTCTCCG TCGCCTTCCC CATCAGCACC TCCGTCGACT GCTCCAAGAT
    CAACTAATTA CTAGCTTGAT CATCTCCAGC TGAGATCGAT ATGTATGGGA
    AGATCTAGAG AGTGACTGTT CACTGCTAGC TTTGTTTATT TTCTTGCTGC
    ATGCGTACGT GCACTATATA ATGTAATAAT GCGTTTCAAT GTTTACATGT
    AGTGTACTAT GTACACTACT TATATATTTT TCATATATAT AATAATCTAA
    TAATAATAAT GTTGTACTG

    Gene models with high sequence identity

    1. AT5G59320.1 [+] show detail - lipid transfer protein 3
      E-value: 0.000000000000006; Score: 77.80

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 2.1e-33
    PatternScan Plant lipid transfer protein/Par allergen 0
    FPrintScan Plant lipid transfer protein/Par allergen 6e-30
    FPrintScan Plant lipid transfer protein/Par allergen 6e-30
    FPrintScan Plant lipid transfer protein/Par allergen 6e-30
    FPrintScan Plant lipid transfer protein/Par allergen 6e-30
    FPrintScan Plant lipid transfer protein/Par allergen 6e-30
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 1.3e-32
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.00000000051
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.00000000000063

    See the detailed result >

    AT5G59320.1

    Model type
    Protein coding
    Short Description
    lipid transfer protein 3
    Curator Summary
    Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
    Computational Description
    lipid transfer protein 3 (LTP3); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 4 (TAIR:AT5G59310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR