K17338

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17338

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17338

Determination of introduced cDNA(s)

  • J013151M04 - Rice Full-length cDNAs - Original: J013151M04

    full reading [+] show sequence

    Nucleotide sequence: J013151M04 - full reading
    TTGAGGCGAT CGATGGAATA ATAATCGTGT AGCGCTAAGC GAATCATTTC 
    TCTTTTTAGA TAGTTTGGAT GTCTAACAAT GCCCATGATT CATGATCTTT
    TAATTGAACT AAGAAAAATT AATCCATGGT GGATCTGCTT GGCATCAAAA
    GGCATGGGGG ACTCCAAGGA GTTCGCCGGC GAGCTGTTCG TGGCGCTGGC
    GCGGCGGAGG AACCTGGAGC CGGAGGACGG CATCACCAAG GAGCAGCTCA
    AGGAGTTCTG GGAGGAGATG ACCGACCAGA ACTTCGACTC GCGGCTTCGC
    ATTTTCTTTG ACATGTGCGA CAAGAATGGC GATGGGATGC TCACGGAAGA
    TGAGGTCAAG GAGGTTATTA TACTGAGTGC GTCGGCGAAC AAGCTGGCGA
    AGCTGAAGGG ACACGCGGCG ACGTACGCGT CGCTGATCAT GGAGGAGCTG
    GACCCGGACG ACCGCGGGTA CATCGAGATC TGGCAGCTGG AGACGCTGCT
    GCGCGGCATG GTGAGCGCGC AGGCGGCGCC GGAGAAGATG AAGCGGACGA
    CGTCGAGCCT CGCGAGGACG ATGATCCCGT CGCGGTACCG GAGCCCGCTG
    AAGCGGCACG TGTCCAGGAC GGTGGACTTC GTGCACGAGA ACTGGAAGCG
    GATCTGGCTC GTCGCGCTGT GGCTCGCCGT CAACGTCGGC CTCTTCGCCT
    ACAAGTTCGA GCAGTACGAG CGGCGCGCCG CGTTCCAGGT GATGGGCCAC
    TGCGTGTGCG TGGCCAAGGG CGCCGCCGAG GTGCTCAAGC TCAACATGGC
    GCTCATCCTC CTCCCCGTGT GCCGGAACGC GCTCACCACG CTCAGGTCCA
    CGGCGCTCAG CCACGTCATC CCCTTCGACG ACAACATCAA CTTCCACAAG
    GTGATCGCGG CGACCATCGC CGCCGCCACC GCCGTCCACA CGCTGGCGCA
    CGTCACCTGC GACTTCCCGA GGCTGATCAA CTGCCCCAGC GACAAGTTCA
    TGGCGACGCT GGGGCCGAAC TTCGGGTACA GGCAGCCGAC GTACGCCGAC
    CTGCTGGAGA GCGCCCCCGG CGTCACCGGC ATCCTCATGA TCATCATCAT
    GTCCTTCTCC TTCACGCTGG CCACGCACTC CTTCCGCCGG AGCGTCGTCA
    AGCTGCCGTC GCCGCTGCAC CACCTCGCCG GCTTCAACGC CTTCTGGTAC
    GCGCACCACC TCCTGGTGCT CGCCTACGTC CTCCTCGTCG TGCACTCCTA
    CTTCATATTC CTCACCAGGG AGTGGTACAA GAAAACGACA TGGATGTACC
    TGATAGTCCC AGTGCTCTTC TATGCATGCG AGAGAACGAT CAGAAAAGTT
    CGAGAGAACA ACTACCGCGT GAGCATCGTC AAGGCAGCGA TTTACCCAGG
    AAATGTGCTC TCTCTTCACA TGAAGAAGCC GCCGGGTTTC AAGTACAAGA
    GCGGGATGTA CCTGTTTGTG AAGTGCCCTG ATGTCTCTCC TTTCGAATGG
    CATCCCTTCT CCATCACTTC TGCACCTGGA GATGACTACC TGAGTGTGCA
    TATCCGTACA CTAGGTGACT GGACGACTGA ACTCAGAAAC CTGTTTGGGA
    AGGCTTGCGA GGCACAGGTT ACTTCTAAGA AGGCTACCCT TTCAAGACTT
    GAAACTACAG TTGTGGCGGA CGCTCAGACA GAGGATACTA GGTTTCCTAA
    GGTCCTTATT GATGGGCCCT ATGGTGCACC GGCGCAAAAC TACAAGAAGT
    ATGACATTCT TTTGCTTATT GGTCTTGGAA TTGGTGCTAC TCCTTTCATC
    AGCATTCTGA AGGATCTGTT GAACAACATT AAATCCAACG AAGAGGTGGA
    AAGCATACAT GGTTCTGAGA TAGGCAGCTT CAAGAACAAT GGGCCAGGAA
    GAGCTTACTT CTACTGGGTG ACCAGAGAGC AAGGGTCCTT CGAGTGGTTT
    AAAGGAGTCA TGGACGATGT CGCTGAAAGT GATCACAATA ATATTATAGA
    GATGCACAAT TACCTGACCA GCGTGTATGA AGAAGGCGAC GCAAGGTCAG
    CTTTGATTGC CATGGTTCAG TCACTTCAAC ATGCCAAAAA TGGTGTGGAT
    ATCGTCTCCG GCAGCAGGAT TCGCACACAT TTTGCGAGGC CTAACTGGAG
    AAAGGTGTTC TCTGACTTGG CGAATGCCCA CAAAAACTCA CGCATAGGTG
    TTTTCTATTG TGGATCCCCT ACACTCACGA AACAACTCAA GGATCTTTCA
    AAAGAATTCA GCCAGACAAC CACAACTAGA TTCCACTTCC ACAAGGAAAA
    CTTTTAAGAC CGTACCAAAG GACGTCTAAA CAGACTGCAT ATACTTGTAT
    AGGAAAGAAA TACGATAGCA TTGGGATAGC AAATATAGTC TTACAAGTTT
    TGCTCTACGA TGGATTGTAC AAAATATATG TTGAAAGCTA GTGTCACCAT
    CGTGCATAGA TTCTGGAATG TTTACAGATA TATGTATTGG AACAGTGGGA
    ATGCATGTTA GAAAAATTGA GTTCC

    Gene models with high sequence identity

    1. AT5G60010.1 [+] show detail - ferric reductase-like transmembrane component family protein
      E-value: 0; Score: 870.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D EF-hand-like domain 0.00029
    PatternScan EF-Hand 1, calcium-binding site 0
    superfamily Riboflavin synthase-like beta-barrel 3.1e-17
    superfamily EF-hand 0.000000000000031
    superfamily Ferredoxin reductase-like, C-terminal NADP-li 0.0000000000024
    HMMPanther RESPIRATORY BURST OXIDASE 0
    HMMPanther NADPH OXIDASE 0
    FPrintScan Cytochrome b245, heavy chain 8.6e-21
    FPrintScan Cytochrome b245, heavy chain 8.6e-21
    FPrintScan Cytochrome b245, heavy chain 8.6e-21
    FPrintScan Cytochrome b245, heavy chain 8.6e-21
    ProfileScan EF-HAND 2 11.389
    ProfileScan EF-HAND 2 5.085
    ProfileScan Ferredoxin reductase-type FAD-binding domain 13.842
    HMMPfam Ferric reductase, NAD binding 6.8e-47
    HMMPfam FAD-binding 8 5.7e-30
    HMMPfam NADPH oxidase Respiratory burst 2.1e-16
    HMMPfam Ferric reductase-like transmembrane component, N-terminal 0.0000000000000017

    See the detailed result >

    AT5G60010.1

    Model type
    Protein coding
    Short Description
    ferric reductase-like transmembrane component family protein
    Computational Description
    ferric reductase-like transmembrane component family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ferric reductase-like transmembrane component family protein (TAIR:AT3G45810.1); Has 1927 Blast hits to 1788 proteins in 283 species: Archae - 0; Bacteria - 154; Metazoa - 723; Fungi - 353; Plants - 523; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR