K17418

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17418

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17418

Determination of introduced cDNA(s)

  • J023123L01 - Rice Full-length cDNAs - Original: J023123L01

    full reading [+] show sequence

    Nucleotide sequence: J023123L01 - full reading 
    GAATTAGGGT GGGGTGGTAG GCGAAATTAC TAACTTACCC TCGCCATTTC 
    GACGCCTCCT CCGTGGTGTC GTCGTGCGCG AGCTATGCTG AGTTTGCCCT 
    TGCCCACCGC TTCCGCCTCC GCCGATCCCC ATCCCTCCCG CGAGCAGGAG 
    CAGGAGCAGG AGCAGGGCTA GCCGTCGTTC CTCCTGCTGC TTCCGCCGCA 
    TCCATCCTGA TACCAGATGT GCCGCCACCA GCCAAGGGCT CGGCTCTCTC 
    CCGATGAGCA GCTTGCAGCT GAAGAAAGCT TCGCATTATA CTGCAAGCCG 
    GTCGAGTTGT ATAATATCAT TCAGCGCCGA TCCATTAAAA ATCCTGCTTT 
    TCTTCAAAGA TGCCTTCTTT ACAAGATTCA CGCAAGACGG AAGAAGAGGA 
    GCCTGATAAC CATATCACTT TCTGGAGGCA CAAATAAAGA ACTGCGGGCA 
    CAAAATATCT TTCCTCTTTA TGTTCTGTTA GCTAGACCTA CTAATAATGT 
    TTCACTTGAA GGGCATTCTC CGATATATCG ATTCAGTCGT GCTTGTTTGT 
    TGACTTCTTT TCATGAATTT GGAAATAAAG ACTACACTGA AGCAACATTC 
    GTCATTCCTG ATGTGAAGAA CTTAGCAACC TCCCGAGCTT GCAGCCTTAA 
    TATTATCCTT ATCAGCTGTG GACGAGCTGA GCAAACTTTT GATGACAATA 
    ACTGTTCTGG GAACCATGTG GAAGGCTCTA CTCTCCAAAA GCTTGAAGGG 
    AAGTGTTTCT GGGGTAAAAT ACCAATCGAT CTTCTTGCTT CATCTTTGGG 
    AAATTGTGTG AGCTTAAGTT TGGGACATAC CGTGGAAATG TCTTCCACGG 
    TTGAGATGAC CCCAAGCTTC TTAGAGCCAA AATTTCTGGA GGATGACAGT 
    TGCTTGACAT TTTGCTCTCA GAAGGTTGAT GCTACTGGTT CATTTCAACT 
    GCAAGTTAGC ATATCTGCTC AAGAGGCTGG TGCAAAAGAC ATGTCCGAGT 
    CTCCTTATAG TGTTTATTCA TATAATGATG TGCCACCTTC GTCATTGACA 
    CATATTATAA GGTTGAGATC TGGCAATGTG CTTTTTAACT ACAAATACTA 
    CAATAATACT ATGCAAAAAA CCGAAGTCAC TGAAGATTTT TCTTGCCCAT 
    TTTGCTTGGT ACCATGTGGC AGCTTTAAGG GTCTAGGATG TCACCTAAAC 
    GCATCGCATG ACCTTTTCCA TTATGAGTTT TGGATATCTG AAGAGTGCCA 
    GGCTGTTAAT GTTAGTCTGA AGACTGATTC TTGGAGAACA GAGCTTTTGG 
    CTGAGGGAGT TGATCCAAGA CATCAAACAT TTTCGTACCG CTCAAGATTT 
    AAGAAGCGTA AAAGGGTGGA AATCTCAAGT GATAAAATTA GGCATGTACA 
    TCCACATATT GTGGATTCAG GATCACCTGA AGATGCCCAG GCAGGATCTG 
    AAGACGATTA CGTGCAGAGG GAAAATGGTA GTTCTGTAGC ACACGCTTCT 
    GTTGATCCTG CTAATTCATT ACACGGTAGC AATCTTTCAG CACCAACAGT 
    GTTACAGTTT GGGAAGACAA GAAAGCTGTC TGTTGAACGA GCTGATCCCA 
    GAAATCGGCA GCTCCTACAA AAACGCCAGT TCTTTCATTC TCACAGGGCT 
    CAACCAATGG CATTGGAGCA AGTTTTCTCA GATCGTGATA GTGAAGATGA 
    AGTTGATGAT GACATTGCTG ATTTTGAAGA TAGAAGAATG CTTGATGATT 
    TTGTTGATGT TACAAAAGAC GAGAAACTTA TTATGCATAT GTGGAATTCA 
    TTTGTTCGGA AACAAAGGGT ACTAGCGGAT GGCCATATTC CCTGGGCATG 
    CGAAGCATTC TCGCAGTTTC ATGGACAAGA ACTTGTACAA AATCCAGCTC 
    TACTATGGTG TTGGAGGTTT TTATGGTCAA ACTCTGGAAC CACAGTCTAC 
    TGGATGCGCG AGCCATGAAT GCCTGCAACA CAATTCTTGA AGGCTACCTG 
    AACGGAAGCT CGGATCCAAA GAAAAATTGA CGCATACAAA TCATTGGCCA 
    ACCTGTAGAG TAAAATGCAC TTGTACTGGT TCTGGCCATT CCAATAGTTT 
    GTTTTGTTTT TGGAAAAAAA GATGTCTGAA GAATTGAAAG CTAACATGTG 
    TTTTGGAGGG AAGAAAATTG AAGGCTGGGG CGGTCATTGT TTCATTTAGA 
    ACTCTTCTCG ATTCTATTTA TTGTAATTGA TGTTACTCAT AACTGTAGAG 
    CAGTATCAAG ACCAAACTGT AATGATATGG TTAGCAATAT TTACATAAAA 
    GTTTATTTTG TTTGTTGTTT

    Gene models with high sequence identity

    1. AT5G51230.1 [+] show detail - VEFS-Box of polycomb protein
      E-value: 4e-149; Score: 48.50

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther POLYCOMB GROUP PROTEIN 1.7e-43
    HMMPfam Polycomb protein, VEFS-Box 1.7e-59
    HMMPfam Polycomb protein, VEFS-Box 0.000073

    See the detailed result >

    AT5G51230.1

    Model type
    Protein coding
    Short Description
    VEFS-Box of polycomb protein
    Curator Summary
    Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.
    Computational Description
    EMBRYONIC FLOWER 2 (EMF2); CONTAINS InterPro DOMAIN/s: Polycomb protein, VEFS-Box (InterPro:IPR019135); BEST Arabidopsis thaliana protein match is: VEFS-Box of polycomb protein (TAIR:AT4G16845.1); Has 297 Blast hits to 235 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR