K17421

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17421

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17421

Determination of introduced cDNA(s)

  • J033087F19 - Rice Full-length cDNAs - Original: J033087F19

    full reading [+] show sequence

    Nucleotide sequence: J033087F19 - full reading 
    GAACACCTCT CTTCTCCTGC GCCGCCGCCG CCTCCTCCTC CTCCCGCATC 
    TCCCTCCTCG CCTCTCGCTG CCGGCCGCGC TTCGCCAAGA TGAACAAGGA 
    GAGGCTTATG AAGATGGCCG GCGCCGTCCG CACCGGCGGG AAAGGCACCG 
    TGCGCAGGAA GAAGAAGGCC GTCCACAAGA CGGGGACCAC TGACGACAAG 
    AGGCTGCAGA GCACGCTCAA GAGAGTAGGT GTCAACACCA TCCCCGCGAT 
    CGAGGAGGTC AACATCTTCA AGGATGATCT CGTCATCCAG TTCGTCAATC 
    CCAAAGTGCA AGCTTCCATC GCCGCAAACA CATGGGTGGT CAGTGGCTCC 
    CCACAGACCA AGAAGCTTCA AGATGTTCTT CCTGGGATCA TTAACCAATT 
    GGGTCCTGAC AACATGGAGC ACCTAAAGAG GATTGCTGAA GAGATGCAGA 
    AGCAGGTAGC TGCTGCAGGT GCCACTGCCC AGGCAAAGGA AGAGAACGAT 
    GATGATGTTC CAGAGCTTGT TCCGGGAGAG AATTTCGAAG AGGTAGCTCA 
    GGAGACAAAA GCCTGATCAT AGATACCACA AGTAGTGAAA TGTTACTTGA 
    CCGCTGTTCT GAGGTCATGG TTTTCTATGA CGGCCCTGTT TTGCTTCTCC 
    TCGTAGGCCA ATCTTTGTAT TTGCAATTGG AAACTTTTAG TTTCTCCGAG 
    TTTTTACCTA AGTTATGAAT GCTGAGGTGC CATGGGGTCC TTTTTACCTG 
    GTTTTGATGT TCACATTTCT GGTTGGTTCA GAATATACTA GCATCAGGGT 
    TTGC

    Gene models with high sequence identity

    1. AT1G17880.1 [+] show detail - basic transcription factor 3
      E-value: 2e-50; Score: 196.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Nascent polypeptide-associated complex NAC 15.647
    HMMPanther TRANSCRIPTION FACTOR BTF3 3.1e-57
    HMMPfam Nascent polypeptide-associated complex NAC 2.8e-19
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G17880.1

    Model type
    Protein coding
    Short Description
    basic transcription factor 3
    Computational Description
    basic transcription factor 3 (BTF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1); Has 841 Blast hits to 841 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 178; Plants - 145; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR