K17427

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17427

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17427

Determination of introduced cDNA(s)

  • J013041G12 - Rice Full-length cDNAs - Original: J013041G12

    full reading [+] show sequence

    Nucleotide sequence: J013041G12 - full reading 
    GATATACACA CCGGGCCACC GGCCGGTAGG GAGTTCTCGC GGTTTTGTCG 
    TTCGATCGAT CGATCGTGTC CATGCTGCTC CGGCTGAAGG CCGTCGCCGT 
    CCATCCGGCG GCGCTCCTTG GGCGACCGCG CAGCCATGAC GCACCCCAGC 
    TCGTCGGTCG CACGGGCGCG TCGACGACGA CGGCGAGGCG GAGGGCGGCG 
    AGGAGCGCCG TGACGGTGAC GATGGCGCTC AAGGAGGAGC CGGAAGGCAG 
    CCGTAGCGGC TTCGCCGGCG GCGTTCCGAG CTGGGACCCC GGGCTGGAGA 
    TCCAAGTCCC TTTCGAGCAA AGACCGGTGA ACGAGTACTC CGCCCTCAAG 
    GATAGCGTAC TCTACTCGTG GGCAGAGCTG AGCCCGGGGT CATTCTTCCT 
    GCGCCTAGGC AGCCTGTGGC TGATCACCTT CACGGTGCTC GCCGCGCCCA 
    TTGCAGCTGC AAGTTTCAGT CCAGGAAAGG ATCCACTCAA ATTCGTGCTA 
    GCAGCTGGGA TTGGAACTCT GCTCCTCGTC TCTTTGGTCG TTCTCCGGAT 
    TTATCTGGGT TGGAGCTACG TTGGTGATAG GCTGTTGTCG GCGGTTGTGC 
    CGTACGAAGA AACCGGATGG TACGACGGCC AAATGCGGGT CAAGCCACCA 
    GAGGTATTGG CTCGTGACAG GCTCTTGGGA TCTTACAAGG TAAAGCCGGT 
    GATTAACCTG CTGAAGCAGA CGCTGGTGGG CACCGGCGCT CTGCTGGTCG 
    GCGCGGTGTC GCTGTTCGCG TTCGCGGCCC CCGTCGAGGA CTTCCTGCAC 
    TCCGTGAACG CACCACCATC CGCTGCCTCC TCCAAGCCCA GTCTCAGAAG 
    GGAGGAGCTG CTGCGTCTGC CCGTGGAGGT GAGGCAAGAC GACGACCTCG 
    CCGCTGCCGC CGCGGAGGCC GCCGACGGAC GGCCGGTCTA CTGCAGGGAC 
    CGCTACTACC GGGCGCTCGC CGGCGGGCAG TACTGCAAGT GGGACGACCT 
    GCTCAACTGA CAAAATACTT CTGTATTACC CAACGGATAC GGTGTGCAGT 
    GTGTCCTGAA TCCTGATATA TGCAGATTGG CATGCGAAGC CTCCGCAACT 
    GTGTAATCGG AACGAAATTT TGTGACCATT GGTTGCGTTA AGGGACAGAT 
    AGATAAATGC TTAATTTATT GGATGTTTGA TCGACGCAAC ATTTGC

    Gene models with high sequence identity

    1. AT5G67370.1 [+] show detail - Protein of unknown function (DUF1230)
      E-value: 2e-87; Score: 319.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Protein of unknown function DUF1230 2e-81
    HMMPfam Protein of unknown function DUF1230 8.4e-54

    See the detailed result >

    AT5G67370.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1230)
    Computational Description
    Protein of unknown function (DUF1230); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1230 (InterPro:IPR009631); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1230) (TAIR:AT5G11840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR