K17428

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17428

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17428

Determination of introduced cDNA(s)

  • J033150L03 - Rice Full-length cDNAs - Original: J033150L03

    full reading [+] show sequence

    Nucleotide sequence: J033150L03 - full reading
    GACGGGAGAG GGAAGAGACA GAAACCCCGA AACCCCCCAA AGGTTCCCAC 
    TTCCTCCCAC CCGCCCAAAC CCATCCTCCG CCGCCAACGC GCCGAGAGCA
    AAAAAAGAGA AGCACCGGGA TGCTGTACAT CGTGGGGCTC GGCCTCGGCG
    ACGAGCGCGA CATCACCGTG CGGGGGCTCG ACGCCGTCCG CCGCTGCGCC
    AAGGTCTACA TGGAGGCCTA CACCTCCCTC CTTTCCCTCG GCCTCGACCC
    CTCCGCGCTC TCCAACCTCG AGAAGATGTA TGGGAAGGAG ATCACGGTGG
    CGGACCGCGA GATGGTGGAG GAGCGCGCCG ACCAGATGCT CCGCGAGGCC
    GCCGACGCGG ACGTCGCCTT CCTCGTCGTC GGCGACCCCT TCGGCGCAAC
    TACACACACT GATCTGGTGG TTCGCGCCAA GAACATGGGG GTGGAAGTGA
    AGGTGATCCA CAATGCGTCC GTCATGAATG CAGTTGGAGT TTGCGGATTG
    CAACTTTACC GCTACGGGGA GACCATCTCT ATACCTTTCT TCACGGAGAC
    ATGGAGGCCG GACAGTTTCT ATGAGAAGAT TCAGAACAAT CGACGGCTTG
    GACTGCACAC ACTTTGCTTA CTAGATATTC GTGTTAAGGA ACCAACGCTT
    GAGTCTTTAT GCAGGGGAAA GAAAGTGTAT GAACCACCAA GGTTCATGTC
    TGTAAACACC GCAATAAGTC AGCTTTTGGA GGTGGAGGAA CTGCGTGGGG
    GATCTGCATA TGGCGCAGAT TCACTATGCA TAGGTGTTGC TCGCCTTGGA
    AGTGATGATC AGAAGATCGT CGCTGGACCT ATGAAGAAAC TACTAGATGT
    CGATTTCGGC CCACCCCTTC ACTGCCTTAT CATAGTGGGA GAGACGCATC
    CTGTGGAAGA AGAGATGATA GAATTCCACA TGATCAAGTC ATGATGAATG
    AAAGTGCTTT TATGGCCTTG TAGCTGGATA CATGATCCCA GGCTTATAGC
    TCCCTTGAAA CGATACTTCG ATGCTTCCGC CCGCCGTGAA AGGTCCACCA
    GTAGTAGTTT ACTGCTCCAA TTGTTGCTCA TTTTTAAGTT AAACTGGGAT
    CAGCTGTTGT TCTTTTTTTG GCCTGATACC GAATACTCTC AAACCAGTAT
    TGAACCTTGT TTACATTGTG TGAGCTCATA TTTGAATGTG TTCGTGC

    Gene models with high sequence identity

    1. AT4G31790.2 [+] show detail - Tetrapyrrole (Corrin/Porphyrin) Methylases
      E-value: 2e-121; Score: 432.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Tetrapyrrole methylase, subdomain 1 2.6e-41
    Gene3D Tetrapyrrole methylase, subdomain 2 3.1e-52
    HMMTigr Diphthine synthase 8.5e-100
    HMMPfam Tetrapyrrole methylase 2.8e-20
    superfamily Tetrapyrrole methylase 1.3e-52
    HAMAP Diphthine synthase 27.952
    HMMPanther Diphthine synthase 1.7e-141
    HMMPIR Diphthine synthase 2.2e-167

    See the detailed result >

    AT4G31790.2

    Model type
    Protein coding
    Short Description
    Tetrapyrrole (Corrin/Porphyrin) Methylases
    Computational Description
    Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR