K17433

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17433

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17433

Determination of introduced cDNA(s)

  • J033074L20 - Rice Full-length cDNAs - Original: J033074L20

    full reading [+] show sequence

    Nucleotide sequence: J033074L20 - full reading 
    GACTCTCTCT CTCTCTCTCT CTCTCTCAAG CTCGGCGGAG GCGGAGGCAA 
    GCAAAGCCTT CTCCCCTCGC CTCACCTCGC AATCCACCTT GGGCGGGCCG 
    TCCGGCGAGC TGAGCGCGGC GGCGCCCTCC TTACTCCTCC CTCCCCACGT 
    GCGGCCCCGT CGGAGCACGG CGGCGACGAA GAACCAGGGG GGTGGGGGGG 
    CGAGGAGGAG GGCATCATTC CACCGGCTGA TTCATTCTTC TTGGCTCGAG 
    TCGAATTGGA GAGGTAATTG CTTGCCTTCT GAGGAACTGC GGGAGGGAGC 
    GAGGAGTCGT GGAGCGACTC TTGAAGGATG GCGGAAGGTG CCAAATTCCA 
    TGGGATCGTT GGCGCTGTTG GCGCGCATGA TGTTGGCGGG AACTTCTGTG 
    ACATGGGGTA CTACCAGAAG CTAGGGGAGG GCTCCAACAT GTCGATCGAT 
    AGCCTTAACA GCATGCAGAC AAGCATATAC GGTGGTTCGG TTGCAATGTC 
    AGTGGACAAC AGTAGTGTTG CATCTAGTGA CTCTCGTACC GGGATGCTTA 
    AGCATCCTGG CCTCAGGGGT CCAGTCATTG TGTCTAGCTA TTCTGTCGGG 
    AACAGCATTT TCCGTCCAGG GCGTGTGTCG CATGCCTTGA GTGATGATGC 
    ATTGGCACAG GCTTTGATGG ACTCTAGGTT CCCCACTGAG ACACTCAAGG 
    ATTACGAGGA GTGGACCATT GATTTGGGTA AGCTGCACAT AGGGATGCCA 
    TTTGCACAAG GTGCCTTTGG GAAGCTCTAT AGGGGAACCT ACAATGGAGG 
    CGATGTCGCA ATTAAGCTTT TGGAGAGGCC AGAGGCTGAC CCTGAGAAAG 
    CTCAGTTGTT GGAGCAGCAA TTTGTGCAAG AAGTCATGAT GCTCGCAACG 
    TTGAGGCACT CAAATATTGT CAAGTTTGTT GGTGCATGCA GGAAGCCAAT 
    GGTTTGGTGT ATTGTGACTG AGTATGCGAA GGGCGGATCC GTTAGGAATT 
    TTTTGAATAG AAGGCAGAAT AGGTCTGTCC CACTGAAGCT TGCAGTGAAA 
    CAGGCATTGG ATGTTGCACG TGGCATGGCA TGTGTTCATG GCCTTGGATT 
    TATTCACAGA GATCTTAAGT CAGACAACCT ATTGATTTCT GGAGACAAAT 
    CTATCAAGAT TGCTGACTTT GGAGTGGCTA GGATTGAAGT GAAGACTGAG 
    GGAATGACAC CTGAAACAGG AACTTACCGC TGGATGGCTC CTGAGGTGAT 
    CCAGCACAGA CCATATGACC AAAAAGTCGA TGTCTACAGT TTTGGCATCG 
    TCCTGTGGGA GCTAGTAACT GGGAACCTTC CTTTTGCAAA CATGACAGCA 
    GTGCAAGCTG CATTTGCGGT GGTGAACAAG GGTGTCCGCC CAGCCATACC 
    CCATGACTGC CTCCCTGCCC TCGCAGAGAT CATGACCAGG TGCTGGGATG 
    CAAATCCTGA TGCCCGTCCC CCGTTCACCG AGGTGGTCAG GATGCTGGAG 
    CAAGTGGAGA TGGAGGTCGT TAACACTGTC CGGAGGGCCC GCTTCCGGTG 
    TTGCATCTCC CAGCCAATGA CCCTAGACTG AGTCACAGCC AGGATCCAGG 
    GTGGAAAAAG GCAACCTGGA GAAAAGTTAA GTCCTGTGTA CCTATCATAT 
    TAATAGGCCT GTTCTGCAGA GAAGATGAAA GCCCAAGCTG AGTGTACTTG 
    GCGTCGCGCG TTCTCTTCGT TTACCCTAGA CAATACCTAG TATCTATCGT 
    CAGACTGGAA TGTATTAGCG GTAGCTTTTT ATCTTTGACA ACAAAAAAAC 
    ACCATGCAGG GCTCTTGTTG CAACAACCGC ATGTTCCTGC TGTATGTTAT 
    CTGTTGTAAT CATCCTGCTT GGAACATGTG CAAGGCTGCA AGGCTTGATG 
    CCTAATAGTA TATATAGCAT ATGTATAATT

    Gene models with high sequence identity

    1. AT2G24360.1 [+] show detail - Protein kinase superfamily protein
      E-value: 1e-166; Score: 583.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 4.7e-79
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine-threonine/tyrosine-protein kinase 3e-66
    HMMSmart Serine/threonine-protein kinase domain 1.8e-54
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.2e-66
    FPrintScan TYRKINASE 6.2e-17
    FPrintScan TYRKINASE 6.2e-17
    FPrintScan TYRKINASE 6.2e-17
    FPrintScan TYRKINASE 6.2e-17
    FPrintScan TYRKINASE 6.2e-17
    HMMPanther Serine/threonine protein kinase-like, ATMRK 3e-167
    HMMPanther SERINE-THREONINE PROTEIN KINASE 3e-167
    ProfileScan Protein kinase, catalytic domain 41.502
    Gene3D no description 1.2e-16
    Gene3D no description 1.1e-55

    See the detailed result >

    AT2G24360.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-like, ATMRK (InterPro:IPR015783), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G31170.3); Has 132546 Blast hits to 130322 proteins in 4939 species: Archae - 142; Bacteria - 14767; Metazoa - 50018; Fungi - 12226; Plants - 34060; Viruses - 645; Other Eukaryotes - 20688 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR