K17437

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17437

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17437

Determination of introduced cDNA(s)

  • J023082D05 - Rice Full-length cDNAs - Original: J023082D05

    full reading [+] show sequence

    Nucleotide sequence: J023082D05 - full reading 
    GACCGGGTTC ACAACCTCGC GTAAACACCC ACGAAATTCT CCGCAAAAGA 
    TAAAAATAAA ATAAAATAAA ACCCACCCCC CTTCTCCTCT CCTCCATCTC 
    CTCGCTTCGT CCCGTTCACA CCACCACCGT CTCGTCGCCT CGTCGGCGGC 
    GTCTCCTCCG CGCGAGGGTC CCCCCCCAAA CCCTAGCCGC CGCCATTGCC 
    ACGCGCGCGC CCCCCACCCC ACGAATGGAA GGAGGCGGAG GCGGAGGCGG 
    AGGCGGTGGC GGAGGTGGAG GTGGAGGAGG CGGAGGCGGG GCACCGTACG 
    CCACGCGCAC GGCGGAGGAG GTCTTCCGCG ACCTCCGGGG CCGCCGCGCC 
    GGCATGATCA AGGCCCTCAC CACCGATGTG GAGAAGTTTT ACAAGCGCTG 
    CGACCCTGAA AAGGAGAACT TGTGCCTTTA TGGATATCCT AATGAAACAT 
    GGGAGGTGAC CTTGCCAGCT GAGGAAGTGC CCCCAGAGAT CCCTGAACCA 
    GCATTGGGAA TCAACTTCGC TAGGGATGGC ATGAATGAGA AAGACTGGTT 
    GGCGTTAGTC GCAGTTCACA GTGATTCCTA GTTACTGTCT GTTGCATTCT 
    ACTTTGGAGC CCGATTTGGT TTTGACAGAG AAGCAAGGAG GCGACTCTTT 
    AATATGATAA ACAATTTGCC AACAATATTT GAGGTAGTGA CAGGAGCCGC 
    TAAGAAGCAG GCGAAAGAAA AGACTCCCAA CAGTAGTAGC AAGAGCAACA 
    AGCCTAGTTC GAAAGTGCAG TCAAAAGCTG AGTCTCGTTC GAAATCTAAG 
    CTGTCAGCCC CCAAGGATGA AGAGGGAAGT GGTGATGATG AGGGAGAGGA 
    AGAGGAGGAT GACCATGACA ACACTTTGTG TGGGACCTGT GGAACCAACG 
    ATGGCAAGGA CGAGTTCTGG ATCTGTTGCG ATAACTGCGA GAAGTGGTAT 
    CATGGGAAGT GCGTCAAGAT CACACCCGCT CGTGCCGAGC ATATCAAGCA 
    GTACAAGTGC CCGGACTGCA CCAACAAGAG GGCCCGGGCA TGAGTAACAA 
    GAAGCTGTGT CGAACTGTGT TAGAGTGGAG TTGTCAATCT CCGGATGTCA 
    TGATCTCTTA GATATTATCT TGCCCTAGCT TTTCTAGTTT GTAAGCTTGT 
    CTCTAATTTA ATTTTAAACT GTAACTTTGA TTAACCTACC TGTGTTTAAA 
    GCTTCATCTT TCCTGTGTTA ATTCTAGCAT TCATAGTGTG TAAACTTGCA 
    CATCTTGTGT CAACTGAAGC CTGAAGGTAC GGCGGCTCCC CTGACC

    Gene models with high sequence identity

    1. AT5G26210.1 [+] show detail - alfin-like 4
      E-value: 5e-81; Score: 298.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF3594 3.4e-53
    HMMPfam Protein of unknown function DUF3594 1.3e-18
    HMMPfam Zinc finger, PHD-finger 7.1e-11
    HMMPanther PHD/F-BOX CONTAINING PROTEIN 4.3e-10
    PatternScan Zinc finger, PHD-type, conserved site 0
    Gene3D no description 1.5e-15
    HMMSmart Zinc finger, PHD-type 8.7e-10
    superfamily Zinc finger, FYVE/PHD-type 1.2e-11
    ProfileScan Zinc finger, PHD-finger 9.659

    See the detailed result >

    AT5G26210.1

    Model type
    Protein coding
    Short Description
    alfin-like 4
    Curator Summary
    AL4 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    alfin-like 4 (AL4); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 3 (TAIR:AT3G42790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR