K17439

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17439

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17439

Determination of introduced cDNA(s)

  • J033082A02 - Rice Full-length cDNAs - Original: J033082A02

    full reading [+] show sequence

    Nucleotide sequence: J033082A02 - full reading 
    GGCATCATAT TCTGTTCCGC ACCGCATCCT CCTCCGTTTC GCCGGCGACG 
    ACGCGGATGG CGACCGACGG CGGCGGCGCC ACCCCCTCAC CGGCGGCGAA 
    GAAGGCCAAC CTCCTCGACC CCTACTCCAT CAAGCATCTC CTCGACGAGA 
    CCGTCTCCGA GGTCGCGAAG AGCAAGGGGT ACCCAGAGGA CGCGCGGCTG 
    AGCAACCGGA GGCTGGCGGT CGGCGCGGCG GTGATCGCCG TCGCGCTCCT 
    CGCGCAGTTC TACCCCCGCA AGTTCCCCGA GAACAGGGAC GTCCTCCTCG 
    CCTGCATCGC GCTGTACGCG GCGCTCAACG TGGCGCTGCA GATCGTTACA 
    TACACCAAGG AGAAGAACGC CATCCTCTTC ACGTACCCTC CCGCGGGATC 
    ATTTAATAGG ACTGGGCTTG TTATATCTTC AAAGTTACCA AGATTGTCAG 
    ACATGTATAC CCTCACAATA GCAAGTGCAG ATCCACATTC TAAATCTTCC 
    AGTGAACCAG TCCATTTCAC TAAGAGTGTC ACAAAATGGT TCACCAAGGA 
    TGGGGTTCTT GTGGAAGGTT TGTTCTGGAA GGATGTTGAG AAACTGATTG 
    ATGACTACAA CAGTGACCAC AGGAGCAAAT GAAAGGATAG CTTGTACTTA 
    TTGATATCAA TATGTCATGA AACAACCAAC CATTCACCTA CTACATCTGT 
    TAGTTTTTGC ATATGACTAG CAAGGAATCG CTTTATAAAA TCAAATCTTA 
    ACTGCATTTT GTTAGACAAT TTTGTGACAT GTCCTGGTAT TAACTGCTGA 
    AATGATGTGT CAATTCCTGA GGTCCTGGTA TTAACTGCTG

    Gene models with high sequence identity

    1. AT2G39960.1 [+] show detail - Microsomal signal peptidase 25 kDa subunit (SPC25)
      E-value: 2e-60; Score: 229.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Microsomal signal peptidase 25kDa subunit 1.9e-45
    HMMPanther MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT 1e-41

    See the detailed result >

    AT2G39960.1

    Model type
    Protein coding
    Short Description
    Microsomal signal peptidase 25 kDa subunit (SPC25)
    Computational Description
    Microsomal signal peptidase 25 kDa subunit (SPC25); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: male gametophyte, callus; CONTAINS InterPro DOMAIN/s: Signal peptidase complex subunit 2 (InterPro:IPR009582); BEST Arabidopsis thaliana protein match is: Microsomal signal peptidase 25 kDa subunit (SPC25) (TAIR:AT4G04200.1); Has 283 Blast hits to 281 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 36; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR