K17441

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17441

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17441

Determination of introduced cDNA(s)

  • J023004I03 - Rice Full-length cDNAs - Original: J023004I03

    full reading [+] show sequence

    Nucleotide sequence: J023004I03 - full reading 
    GGTCCCCTAC ACACCTACCC GAGGAAGAGG AGGAGGTGGG GTGGCCATGG 
    CGGCGGCGGA GAAGACGAAG CCCGTTCTTT ACAGCGAGTG GATGAGCTCG 
    TGCTCCTACA GGGTCCGGAT CGCCCTCAAC CTCAAAGGTA TTGATTATGA 
    GTACAGGGCA GTGACACGGG GTGATCCAGA TTATGGGAAG ATCAATCCAA 
    TTAAGTATGT GCCAGCATTA GTAGATGGGG ATTTCACTAT TTCTGATTCT 
    CTAGCAATCA TATTGTATCT TGAAGACAAA TATCCCCAGC ATCCTCTTTT 
    ACCTCAAGAT CTAAAAAAGA AAGCTCTTAA CATGCAGATT GCAAATATCG 
    TGTGTTCAAG CATCCAACCT CTTCAATGCT ATGCTGTAAT TGGTTTAGCT 
    GATGGCAAAA TGAGCGCCAA CGAGAGCCTT CAGATAGTTC AGCATTACAC 
    TGACAAGGGA TTTAGAGCAA TTGAAAAACT TCTGGAAGGA TGTCGCAGTA 
    AATATGCTAC TGGAGATGAA GTCCAATTGG CGGATGTGTT TCTAGCGCCC 
    CAGATTCACG CAGGAATAAC ACGTTTCCAA ATTGATATGT CAAAATATCC 
    AATTCTGACG AGATTTTACA AGGCCTATAT GGAACTTCCA GCATTTCAAG 
    CTGCTGTCCC TGAAAACCAA CCAGATGCAC CTTCATCCTG ATAATTGAAG 
    GGTGCTGCTC CATCAAGATG CCTGCGTGGA AGTCTGCATT TCTGCAAGTC 
    TCCATGAAGT ATACCCACGA CATCATGCAT TTCAAGCTGC ACATCCTCAA 
    AACCAACCAG ATGCACCTCT ATCCCAATAA TCAGGATTCC AAGCGAGCCG 
    TATACATTGA TATTCATGTA ACTTTTACTT AAAAAATTGG ATGAGTAGTC 
    TCCAGTGCCA TACATGTAAT TTCAGTGTAA AATGTTCAGT GTAAACAAGA 
    TAGTGGGACA TGAATTACCT GTGACCCACA ACATTATCCA TCCAGTACTC 
    CAGTACCTAG GGATATGGTA TTGTTGTATA TGTAATTGAT GATGCACTGT 
    CTGAACTTCA GATGCAGTAT GTGATTAGTC CACTGATGAT GCACATACGT 
    ATGCACTGAC GTAAGCAGAA TTGAATGTTG GTACACATGT AAACACCTCA 
    ACTATTACTG AATAAACTCT CATACTGGCC CG

    Gene models with high sequence identity

    1. AT2G02390.1 [+] show detail - glutathione S-transferase zeta 1
      E-value: 2e-62; Score: 236.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutathione S-transferase, N-terminal 0.00000000000038
    HMMPfam Glutathione S-transferase, C-terminal 0.00000011
    Gene3D Thioredoxin fold 1.5e-21
    Gene3D Glutathione S-transferase, C-terminal-like 3.2e-41
    ProfileScan Glutathione S-transferase, N-terminal 24.874
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 21.39
    HMMTigr Maleylacetoacetate isomerase 1.5e-81
    HMMPanther GLUTATHIONE-S-TRANSFERASE THETA, GST 3.3e-57
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 3.3e-57
    superfamily Glutathione S-transferase, C-terminal-like 2.3e-31
    superfamily Thioredoxin-like fold 2e-26

    See the detailed result >

    AT2G02390.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase zeta 1
    Curator Summary
    Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide.
    Computational Description
    glutathione S-transferase zeta 1 (GSTZ1); FUNCTIONS IN: glutathione transferase activity, catalytic activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Maleylacetoacetate isomerase (InterPro:IPR005955), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class zeta) 2 (TAIR:AT2G02380.1); Has 17196 Blast hits to 17170 proteins in 1512 species: Archae - 0; Bacteria - 9185; Metazoa - 2216; Fungi - 532; Plants - 2070; Viruses - 0; Other Eukaryotes - 3193 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR