K17446

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short) abnormal (PATO:0000460) (Silique::Others)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17446

Determination of introduced cDNA(s)

J013124K03 - Rice Full-length cDNAs - Original: J013124K03

full reading [+] show sequence

GTTACTTCTT ATGTGTTTAG TGAAGGCAAA ATGAACATTG AACGGCTGAA 
GCAACTTGTC GATCTGGTTG GGAAACATAG GCTTGTTTTG GACCTTAGTT 
GTAGAAAAAA GGATGGAAGA TATGCCATCG TGACTGACAG ATGGCAGAAA 
TTCAGTGATG TCTTTGTGGA TGAGCCAACA TTAAAACATC TTGCTGCCTA 
TGCAGATGAA TTTTTGGTTC ATGGTGTTGA TGTGGAGGGG AAAAGGTTAG 
GAATTGATGA AGAACTTGTC GAACTATTGG GACGTTATTC ACCTATACCT 
GTAACTTATG CTGGGGGTGT GTCTACAATG GATGACCTAG AGAGGATAAA 
AAGAGCAGGC AACAGTCGAG TTGATGTTAC GGTTGGGAGT GCCCTTGATA 
TATTCGGAGG AGATTTGCCC TACAAGGACG TCGTTCTTTG GCACAAGGAA 
CAAAATATGG TTAGCCAACC ATGATATATC AGAGGTATAA TGCTTAACCT 
GTTCCATCAG CTCGATTGTT ATGCACAGAC CTCCAGGGTC TAGAAGTAAT 
GCTAATGCAT TTTCTCAAGT GTTGTACTGC GAATAATTCG ATGGGTCTTC 
TGTGGTATAA GTTCAAGCTG AAGGGTTCGA TTTTGTTCGG ATCTGGAACT 
AGGCTTTACA TTGAGGACTG GCCGAGCTGT TTATCAAGCG ACTGCACTAT 
ATGTTTTTGA GATTAAAACA CTGTTAACAT GATATGTAAG CACATCTACT 
GAGTTAGCCC GTCTGATGGT GAAACATAAT GGGGGCCTCC ACTAGTCCAC 
AGCTCATTAA TCATACTCAA CATTTGGCG

Gene models with high sequence identity

AT2G36230.1 [+] show detail - Aldolase-type TIM barrel family protein
E-value: 1e-65; Score: 246.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Aldolase-type TIM barrel	1.8e-17
superfamily	Ribulose-phosphate binding barrel	1.3e-19
HMMPanther	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic	3.7e-63
HMMPfam	Histidine biosynthesis	1.1e-16

See the detailed result >

AT2G36230.1

Model type: Protein coding
Short Description: Aldolase-type TIM barrel family protein
Curator Summary: Encodes a BBMII isomerase involved in histidine biosynthesis.
Computational Description: ALBINO AND PALE GREEN 10 (APG10); FUNCTIONS IN: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis (InterPro:IPR006062), Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic (InterPro:IPR011858); Has 5178 Blast hits to 5176 proteins in 1344 species: Archae - 226; Bacteria - 3159; Metazoa - 0; Fungi - 140; Plants - 59; Viruses - 0; Other Eukaryotes - 1594 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J023006H21 - Rice Full-length cDNAs - Original: J023006H21

full reading [+] show sequence

GACTCCTCTC CCACCATCAT TCACAGCCGT GCTTCGCTCC TCCAAACCCA 
AAAAATTTCT CCTGCTTTTG TTTCCTGCAC ACCGGCTAGA TCTCGCCAAG 
AACTCGGTAA TCCCAAGCCC TGGGTGAGTG AGATCCAGCT TCGCAAGAAG 
GTTTTGGGGG TTCTTGGGCA GTTCTGCCAG GAGAGTGACA CTGGATGATT 
GCATAAATGA AGCTTGCTGA ATGTAGATTG TGAAGTTCTC CTTTCCTGCG 
TACGGCCATA TACACTTTTA TCATGGCACC GCGCAACAGG TCTTCAGCTA 
GAAGGCCTCT CTGGATTGTC ATCTTGATTG CTTTTGTCTG TGCAGTAGGC 
ATTGGAGCCT ATCTTTATAC ACCCCAGCAT TACACACCTT GTTACTTGGT 
GTCATCAAAT TCCTGTAGTT CTCGGCCTCC TCCAGAACCT GCTAGGGTTT 
ACACTGATGA TGAGATTGCT GCTCGTATTG TCGTAAGAGA TATCATTTTG 
GCACAGCCAG TTCAGTCAAA GAATCCAAAA ATTGCTTTCA TGTTCTTGAC 
ACCCAGTTCA TTGCCATTCG AGAAGCTTTG GGAAAAGTTC TTCATGGGGC 
ATGAAGACAG ATATACCATA TATGTACATG CATCAAGAGA AAGGCCTGTT 
CACGCTAGTC CGATATTTAA TGGCAGAGAT ATTCGAAGTG AAAAGGTAGT 
CTGGGGCACA ATTTCAATGA TTGATGCAGA GAGGAGGCTT TTGGCTAATG 
CACTGCAAGA TCCTGATAAC CAGCATTTTG TCTTGCTCTC TGAGAGCTGT 
GTACCACTTC ATAACTTTGA TTATGTATAT AGCTATCTTA TGGAAACAAA 
TATCAGCTTT GTTGACTGTT TTGACGATCC TGGTCCACAT GGAGCAGGCA 
GATATTCTGA TCATATGCTA CCTGAAATTG TTAAGAGAGA TTGGAGAAAA 
GGTGCACAGT GGTTCACAGT GAAACGTCAG CATGCAGTTC TTATTCTTTC 
CGATTTCCTT TACTATGCAA AGTTCAAGCG GTACTGTAAG CCGGGAAACG 
AATGGCATAA CTGCTATTCT GATGAACACT ATTTGCCAAC CCTCTTTAAT 
ATGGTTGATC CAACTGGAAT TGCAAATTGG TCAGTGACAC ATGTTGATTG 
GTCTGAAGGA AAATGGCATC CTAAAGCTTA CAGGGCTGTT GACACAAGCT 
TTGAACTGCT TAAGAATATT TCGTCCATTG ATGAGAGTAT TCATGTTACA 
AGCAATGCAA AGCACCAAGT GATGAGAAGA CCGTGCCTAT GGAATGGCAT 
GAAGAGGCCT TGCTACCTAT TTGCACGGAA ATTCTATCCC GAGGCACTCG 
ACAATCTGAT GAACATTTTC TCAAACTTCA CTATCATCTA AGGGAAGGAT 
GAATCAAAAA CCTAGTTTGC ATGTAACACT ACAGTATAGG CCTTGGAAAA 
TCAGAAACCC AGAGAGACTC GCTGAATTGT TTTTTGTGAT CTCTCTTGGA 
ACATCAAATG ATTTTCCTTT TTCGCGAAGA TGTTGCATGG TTTGCAGTTG 
AAAGAGCAGT CAAATTTGTT CCCC

Gene models with high sequence identity

AT4G30060.1 [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
E-value: 2e-134; Score: 476.00

InterPro Scan Digest

See the detailed result >

AT4G30060.1

Model type: Protein coding
Short Description: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Computational Description: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT2G19160.1); Has 603 Blast hits to 603 proteins in 26 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 557; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link: InterPro Scan - TAIR