K17504

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17504

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17504

Determination of introduced cDNA(s)

  • J013005I15 - Rice Full-length cDNAs - Original: J013005I15

    full reading [+] show sequence

    Nucleotide sequence: J013005I15 - full reading
    GGAATTCCAG TAACTTTCCT CTCATCTCTC ACAGAAAAAA CATTCCTCTC 
    ATCTCCAATC AGCAGCTATC TCCCTTCCTC ATCACCAGCT TGCTGTGATC
    TTATCAGGCC TTTTTGTTGT TCTGCTGGTC TTGCTCGCGT GCAAAGAGAT
    GCCGGAGCAC TCTGAGAATG CGGCTGCGAA CATTGTGGAC AGCATAGTGG
    ACGCCATTGC CGACAATCTT CCCAAGCAGA AGTCAGTCAG ATTTGAAGAT
    GGCTCAATCT CTGATCAAGC TAAGAGACTC TTCGGTGGTC AGAAGTCTGT
    CCATCATGTT TTGGGTGGTG GAAAATCCGC CGACGTGTTG TTGTGGAGGA
    ACAAGAAGAT ATCTTCAAGT GTTCTTGCAG TTGCAACGGC TGTCTGGGTT
    TTCTTCGAGT GGCTCGACTA CCACTTCCTG ACGATTGCTT GCTTTGTTCT
    TGTTCTTGGC ATGGTTGTCC AGTTTGCATG GTCCACTTTT GCAGGCATGC
    TAAATGGGTC ACCTTCGAAA GTTCCTCGCG TCGAATTGCC GGATGAGCTG
    TTCGCAAACA TTGGTTCTGC AATTGGCACC CAAGTGAACA AGTTCTTGGG
    CACTCTTCAG GATGTGTCTT GTGGAAGAGA CCTGAAGAAT TTTCTCCTGG
    TGATTGCCGG GTTCTTCGCG GCCGCTATCA TTGGGAGCTG GTGCAATCTC
    CTCACTGTCA TTTACATTGG ATTTGTGTGT GCTCACACTC TCCCGGTGCT
    GTATGAGAAG AACCAAGAAA AAGTGGACGA GTTCCTGTAC AACACACTTG
    GCCTGCTTCA GAATCAGTAT CAGAAACTTG ACAAGGGTGT CCTGGGCAAG
    GTGCCCAAAG GGATCATCAA GCTTAAGAAG AGCGATTAGT TTCACTAGCT
    GCTGCTGCTG CTAATGCTGC GTACAGTCAA TCAGAATACT GCGTAATTTG
    GACAGATGTT AGCTTCCCCT GAACAGTTAA TTGTGTACAG TATTGGAAAA
    CACCGTGTCA GTGATGCTAG TGGTATACTC CTATATTGTA GGCCAAATTC
    ATCAGTGGCA GATTGTTTCA GCTAGTCTCA TGTGTTTTGC CCATGAGAGA
    AATTGGGAAA AAAAATAAAA GGTGATTTGT G

    Gene models with high sequence identity

    1. AT3G10260.3 [+] show detail - Reticulon family protein
      E-value: 9e-64; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Reticulon 44.687
    HMMPfam Reticulon 2.2e-49
    HMMPanther RETICULON-RELATED (PLANT) 2.7e-79
    HMMPanther Reticulon 2.7e-79

    See the detailed result >

    AT3G10260.3

    Model type
    Protein coding
    Short Description
    Reticulon family protein
    Computational Description
    Reticulon family protein; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1); Has 1060 Blast hits to 1060 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 0; Plants - 458; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR