K17512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17512

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17512

Determination of introduced cDNA(s)

  • J023008G15 - Rice Full-length cDNAs - Original: J023008G15

    full reading [+] show sequence

    Nucleotide sequence: J023008G15 - full reading 
    GATGGCTACA GGTGGAGGAA GTATGGGCAA AAGGCGGTCA AGAACAGCCC 
    ATTCCCAAGG AGCTACTACA GGTGCACCAA CAGCAAGTGC ACTGTGAAGA 
    AGCGCGTGGA GCGGTCTTCC GACGACCCTT CCGTCGTGAT CACCACCTAC 
    GAGGGCCAGC ACTGCCACCA CACCGCCTCC TTCCAGCGCG GCGTCGGCGG 
    CGCCGCCGTC GCGGCGCACA TCCACGGCGC GGCGGCCGTC GCCCTCGCCG 
    AGCAAATGTC GGCGTTCGTC TCGCCGCCGC CACAGCCGCA TATGCTGTAC 
    GGTTTACCCC GGTTGCACCC GCCGTCCTCC GAGACCGCCG TCAGCTGCTC 
    GATGCCGACG ACGACGTCTT TGCAGGAGCT GAACAATAGC GAGGGGCTAC 
    AACGCCCTGG CTATAATAAT AGCCCCCAGG CGGCGGTGAC CATCGCGCAG 
    CGGCCGCCGT CGCCGTCGGT GCCTCCGGCT GTTTCGTTTG ACAAGGGGCT 
    ACTTGATGAT ATTGTGCCTC CTGGAGTTAG ACTTGGATGA CAATACTCAA 
    ATATACATGC ATGACTTATC TCCCTACACT AGATATTTGA AGTGTCATCT 
    CATCTCTTGG CATGGAGGCA GCTGGCAGGA AGGCAAATCA CGCAGCTAGG 
    GTTCTTTGAT TAGCTCCTGC TGAAATCCAC CGTCTCAGTC ATTACCTACC 
    AATTAATGGC TTGGAAATTA GGAGTATATA TTAATTAAGC TTATTGCAAC 
    GATGGAGAGC TGACTTACAA GTGATTGCAA ACCTCATTGG TCAGCCGGTG 
    GAGTATTTTT CATGGCGAAC TTTTATGTGC CCGATTAACC GTAGTCTGTG 
    TATGCAGTTG GCAGCACTAG GCATTCCCTG ACTGTATCTT CTTGGCAGAA 
    GAATCTCTAC CTATGTTAAC TACTTCTGCA TTATAATGTG TATGTAGGTT 
    GGTGTAGATA TATACTACTA GCTATATCTA TGTACACTTA TGCTAAATTA 
    ATGTTGTGCT GTAGTATAAT GACAACCATT CAACCTTTTG TTCTTC

    Gene models with high sequence identity

    1. AT1G69310.2 [+] show detail - WRKY DNA-binding protein 57
      E-value: 1e-30; Score: 130.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart DNA-binding WRKY 3e-35
    ProfileScan DNA-binding WRKY 28.816
    HMMPfam DNA-binding WRKY 9e-30
    Gene3D no description 6.8e-23

    See the detailed result >

    AT1G69310.2

    Model type
    Protein coding
    Short Description
    WRKY DNA-binding protein 57
    Curator Summary
    member of WRKY Transcription Factor; Group II-c
    Computational Description
    WRKY DNA-binding protein 57 (WRKY57); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 48 (TAIR:AT5G49520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR