K17513

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17513

Determination of introduced cDNA(s)

J013070D13 - Rice Full-length cDNAs - Original: J013070D13

full reading [+] show sequence

GGAAGGCCCA AAGCCCACAA CAGAGAGGAG AGTGGGCGAC GGGGGGCTAG 
GGCGGCGGCG GCGCGGCGAC CAGCGACGGG CGGCGCGCAC CTGACCGGAA 
TGGCCCACCT CGCGGCCTCT GCCGCCCCGC TTCCAAGCGC TGACCCCGAC 
GCCGGCGAGG AGTCCTCCCA CTCTCCGCCG CCGCCGGAGA AGGGGCTGAG 
GAAGGTGGTG GTGGTGATGG GCGCGACTGG CGCCGGCAAG TCGCGGCTGG 
CCGTCGACCT CGCGAGCCAC TTCGCCGGCG TCGAGGTGGT CAGCGCCGAC 
TCCATGCAAG TCTACGGTGG GCTCGATGTC CTCACCAACA AGGTCCCCCT 
CCACGAGCAG AAAGGCGTTC CTCACCATCT CCTGAGCGTG ATTGATCCCT 
CTGTGGAGTT CACTTGCCGC GATTTCCGCG ACCATGCTGT GCCGATTATA 
GAAGGTATAT TGGATCGTGG CGGCCTCCCT GTTATTGTTG GTGGTACAAA 
CTTCTACATC CAGGCTCTTG TTAGCCCATT CCTCTTTGAT GATATGGCAC 
AGGATATTGA GGGTCTTACT TTAAATGACC ACCTAGATGA GATAGGGCTT 
GATAATGATG ATGAAGCCGG TCTGTATGAA CATTTGAAGA AGATTGATCC 
TGTTGCTGCA CAAAGGATAC ACCCGAACAA CCATCGAAAA ATAAAACGCT 
ACCTTGAGTT GTATGAATCC ACAGGTGCCC TACCTAGTGA TCTTTTCCAA 
GGGCAAGCCA CAGAGAAGTG GGGTCGACCT AGTAACTCCA GATTTGACTG 
TTGTTTCTTG TGGTTAGATG CTGATCTTCA TGTTCTGGAT CGTTATGTCA 
ATGAAAGGGT CGACTGCATG ATTGATGATG GCCTGCTAGA TGAAGTGTGT 
AACATATATG ATCGAGAGGC CACTTATACC CAAGGGCTGC GGCAGGCCAT 
TGGTGTTCAT GAATTTGATG AGTTTTTCAG ATTTTATTTT GCAAGGAAGG 
AAACCGGTGA GATAAAGATG GATTCCTGTA CAACTATGGC AGGTCTCCAT 
GATGATAACC TGAAGGGCTT ATTGGATGAA GCAGTCTCAC AACTAAAAGC 
AAACACTCGC AGACTTGTTC GACGTCAAAG ACGAAGGCTG CATCGGTTGA 
ATAAATATTT TGAGTGGAAC TTGCGTCATA TTGATGCAAC AGAAGCTTTC 
TATGGTGCCA CTGCTGACTC ATGGAACATG AAAGTTGTGA AACCTTGCGT 
GGATATTGTT AGAGATTTCT TGTCTGATGA TACAATTTTG GCAAGCAGAG 
ATGGTTCTAG TGTAACTGGA AGCCCTAGGA TGTCTTCAAG AGAGTTGTGG 
ACTCAATATG TTTGTGAGGC CTGTGATAAC CGGGTACTTC GGGGAACGCA 
TGAGTGGGAG CAACACAAGC AAGGCCGATG CCACCGTAAA AGAGTACAAC 
GTTTGAAACA GAAGGCTAGT ACAGTGATAT CATTATAGGC AATTAGCACT 
GTTTGCACTC TCGGTGTTCA TGAACCTTTC TTCATTCTCT GCAACTGTCC 
CCATGCATCC TGTTTGTCAA ATTGGCTGAA GACTACACCA TTCAGAAGGT 
AGCAAGCAGC AGATATATTT GTTAATAGTA CCTTGCTAGA TTCTTGTGCC 
AGTTCCAAAC ATCCAATGCA GAGAATACAA ACTCTACAGA TTGGTCAGC

Gene models with high sequence identity

AT2G27760.1 [+] show detail - tRNAisopentenyltransferase 2
E-value: 2e-116; Score: 416.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	tRNA isopentenyltransferase	1e-50
HMMPfam	zf-C2H2_jaz	0.000032
superfamily	P-loop containing nucleoside triphosphate hyd	0.0000000000007
HMMPanther	TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSF	1.2e-101
HMMPanther	tRNA isopentenyltransferase	1.2e-101
HMMTigr	tRNA delta(2)-isopentenylpyrophosphate transferase	2.7e-51

See the detailed result >

AT2G27760.1

Model type: Protein coding
Short Description: tRNAisopentenyltransferase 2
Curator Summary: Encodes tRNA isopentenyltransferase, similar to yeast MOD5.
Computational Description: tRNAisopentenyltransferase 2 (IPT2); CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 5 (TAIR:AT5G19040.1); Has 8447 Blast hits to 8274 proteins in 2665 species: Archae - 0; Bacteria - 5426; Metazoa - 146; Fungi - 137; Plants - 431; Viruses - 0; Other Eukaryotes - 2307 (source: NCBI BLink).
Link: InterPro Scan - TAIR