K17518

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17518

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17518

Determination of introduced cDNA(s)

  • J033074P11 - Rice Full-length cDNAs - Original: J033074P11

    full reading [+] show sequence

    Nucleotide sequence: J033074P11 - full reading
    GCGCCGCCAC ACCTCCACCT CTCCTCTTCC TTCCCCTCGC CGCCGCCGCC 
    TTCTCGTCGA CGCAGCCATG TCGGCGGCGC AGCAGCAGAA GCACGAGGTG
    GACCGGGCGA CGGTGGCCGG AGCCGTGGCC GCGCTGTTCA AGTGGATGCG
    CGCGCGCGCG GCGGAGGCTC CACCGAACCT CCTCGCCGAC GAGCGCGACG
    ACCTCCTGCT CCTCCAGCTC TCCCTCCGCC GCATCCCGCC CTCACCGACG
    ACCAAGCCGC GCCTCCTTCC GCTCCCCCAC CCCGTCATCG TCCCCGGCGA
    GTCGGCCTCC ATCTGCGTCA TCTCCGACGA CCGCCCCAAG TCCCGCTCCC
    CGGCCGCCTC CGACCTGCTC GACGCGTCCA GGTCCCACCA CCTCCCCGTC
    TCCGAGGTCA TCCCGCTCTC CGCCCTCCGC ACCGACTACC GCCCGTACGA
    GTCCCGCCGC CGCCTCGCCG CCTCCCACGA CCTCTTCATC GCCGACCGCG
    CCGTCCTCCC GCTGCTCCCG CGCGTCCTCG GCAAGGCCTT CTACTCCACC
    AAGAAGGCCC CCGTCGCCGT CGACTTCGCC CGCACCGGGT GGCTGGAGCA
    GGTCCGCAAG GTGATGAACT CGACTTTTCT CTACCTGCGG ACGGGCACCT
    GCTCTGGGAT CAAGGTTGGG AGGCTGGACA TGAAGGAAGA GGACACCGTG
    GAGAATGTGA TGGCGGCGGT GGAGGCGGCC GTGGAGAATG TGCCCAAGAA
    GTGGGCGAAT GTGAGGTCTC TCCATTTGAA GGCTGTGGAT TCAGTTGCAT
    TACCAATTTA CCAGGCTGTG CCGGAGTTGG GCATGAAGAT CGAGGTCCGG
    TTTGCACAAT TGGAGGGAGA AGTCGGTTCC GGGGAGGTTA TCGATGCTTC
    GGAAGCTGGA GCTGCACTGA AGGGTGTCGG CAAGAAGAAG GCGAAGAAGG
    CATTGAAACA TGTGGAAGAA GAGAATGCTG GTGAGGAAGC TGCACAGGAG
    AGTGGCAAGA GGAAGAGGGG TAAGAAGCAA CTAGCTGAGG ATTTGATGGA
    GCAAGACATC CAAGATGTGA GTGAGAAAAG GAAGAAGGTG AAGGAGGGCA
    CCCCTGCTGC CGAAACGCCG AAGATTAGCA AGAAGGGTAA GGAGAAGAGC
    AAGCGTGCAT TGGACAAGGA GGGGGAGGAT GCAAGTGTGG AGGAAGCCAG
    TAACAAGAAA AAGAAGGGCA AGAAAGAGGT GGTGAGTGAT GTTGGGGAGA
    AGAACAGCAA GGTGAAGAAA TCAAATGGTG ATAAGGAGAA GAGAAGGACC
    AGATTAAGGG TATAGGTTTT ATTCTCTATC TCCTGAGAGA TGCTTGTGAT
    ATTGGTTGAT CGACAGTGTC GTGATGTTCA TCGTGTTGAT TAGCTGGGCT
    AATCTGATAG TTTATCTGCT GGCAGAAGAA CTATGCCACT GTCAAGTTTT
    TGGTAGCCTT GTAGTACTTT ATAAGATCTC CAATCTACCG CAGAATGTTC
    TACTTTTGTG TGCACTAGAG GTGTCTTCAA AAGTTGTATC TTTTGTTTTT
    GTTAGCTTAC TAGCCTGACT GCCTGAGCCT TCAGGTTAAA GATAGTATGG
    TAAAACTGTT TCTGGCTTCA TGTGGTTCGC ATCAATTTTG TGATCATCTA
    AGAATATGTC TCAGTTGTTG TCTTCCCTGA ATTACTCATC TAGCATATGC
    TGTACACTTG GAACCCAGTT TCAATAGGAG CTGGGCTGGG CCATTTGTAC
    TCTCTTACTT TGCATGACTT GTGAGGCGAT GGAATGGAAT TGAATTGCTG
    C

    Gene models with high sequence identity

    1. AT3G58660.1 [+] show detail - Ribosomal protein L1p/L10e family
      E-value: 8e-47; Score: 185.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L1 0.000000000029
    HMMPanther PBK1-RELATED 5e-45
    HMMPanther RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 5e-45
    superfamily Ribosomal protein L1 2.3e-41
    Coil coiled-coil 0

    See the detailed result >

    AT3G58660.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L1p/L10e family
    Computational Description
    Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42650.1); Has 3644 Blast hits to 2818 proteins in 411 species: Archae - 34; Bacteria - 198; Metazoa - 1370; Fungi - 494; Plants - 482; Viruses - 5; Other Eukaryotes - 1061 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR