K17529

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17529

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17529

Determination of introduced cDNA(s)

  • J013000E05 - Rice Full-length cDNAs - Original: J013000E05

    full reading [+] show sequence

    Nucleotide sequence: J013000E05 - full reading 
    GAGCGGTGCG GTCGTGCGGA TAACGAACGA ACGAAGAGAA AGCATGGCAA 
    TGGCAATGGC GGCGATGAGA GGGGCGGCGG CGAGCTTGGG TCCGGGCGCT 
    GTGTCTTGGA ACTCGAAGCG CTTCTTCCTC TCCTCCTCCT CCACCACCAG 
    CCGCCCCCAT CGTCGTCGTC TACGCGCCTT CCCGAGCTCG GAGCAAACTC 
    TGGAGGAGCT TAACCCTTCC GTTGAGCTGC TCAGGAAAAC TGCGGAGGCC 
    GTTGGCGATT TCAGGAAAAC ACCCATCTAC ATCGTCGGAA CCGACTGTAC 
    TGCCAAGCGC AACATTGCAA AGCTCCTTGC CAATTCCATC ATATACCGCT 
    ACCTCTGCAG TGAAGAGCTG CTGGAGGATG TTCTTGGAGG CAAAGATGCC 
    CTCAATGCTT TCCGGGAATC CGACCTCAAC GGCTACCTCG AAGTCGAGAC 
    TGAAGGCCTG AAACAGCTCA CCTCCATGGG CAGCCTCGTG CTTTGCTGTG 
    GGGATGGTGC TGTCATGAAC TCAACCAATC TAGGGCTACT GAGGCATGGA 
    GTCTCCATTT GGATTGATAT TCCTCTGGAA TTGGTGGTGA ATGATATGTT 
    GAAGACACAA GCTACTTCAG ACCCTGATTC CTTTTCTGAG GCAATGAGCA 
    GAGTCCGACA GCGACACGAT GAACTAAAAG AGCGCTATGG AGTTTCTGAT 
    ATAACTGTTT CAGTACAAAA TGTGGCATCT CAACTGGGCT ACAGTAGCAT 
    CGACTCAGTG ACCCTAGAGG ACATGGTCCT TGAGATTGTG AGGCAAATAG 
    AGAGGCTGAT CCGAGCGAAG TCGATGATGG AAGCTGCTGG GAAGCCCTTC 
    TAAAAGAAGG AAGGATCCAT TGATGTATAG ACTGTTGGTC ATGTATGTAC 
    CTCCTGATCC CTGAGGAATT GCCTTAGATG TTCCAGGACC AGGAAGCAAA 
    AAGTGCCGCC ACAGCTACTG ATTGATTAAT TTTGTACCGA ATGATCAATC 
    ATTCGATTGA TATTTTTACA TTCCCTTGTG ACTTGTGAGG GAGACATATG 
    TAGCAGAATG AAAAAGAAGT CGAATTTATT TTCAAAAAAA GAAGCTGTGA 
    GTGTGGCTAG AATCTACACT TGTTC

    Gene models with high sequence identity

    1. AT3G26900.3 [+] show detail - shikimate kinase like 1
      E-value: 5e-40; Score: 162.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Shikimate kinase 1e-14
    HMMPanther SHIKIMATE KINASE 6.9e-29
    superfamily P-loop containing nucleoside triphosphate hyd 6.5e-08
    Gene3D no description 2.6e-13

    See the detailed result >

    AT3G26900.3

    Model type
    Protein coding
    Short Description
    shikimate kinase like 1
    Computational Description
    shikimate kinase like 1 (SKL1); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 1 (TAIR:AT2G21940.5); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR